WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 18602085

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
99339618	GT-AG	0.0002459668943576	1274	rna-XM_037636245.1 18602085	1	1563665	1564938	Jatropha curcas 180498	AAG\|GTGTGCTTCT...CTTTTTGTAATT/TTATTTCTCACG...TTCAG\|GAC	0	1	1.663
99339619	GT-AG	3.579085285705795e-05	219	rna-XM_037636245.1 18602085	2	1565348	1565566	Jatropha curcas 180498	CAG\|GTGACTGTTT...GCTCTCTTAATG/AATGTTCTGAAT...TCCAG\|CAA	1	1	30.007
99339620	GT-AG	2.4491627706867312e-05	88	rna-XM_037636245.1 18602085	3	1565695	1565782	Jatropha curcas 180498	ACG\|GTACGTGCTT...TGTTCATTGATT/CATTGATTCATC...TACAG\|GAC	0	1	38.877
99339621	GT-AG	0.0009359027014573	1053	rna-XM_037636245.1 18602085	4	1565843	1566895	Jatropha curcas 180498	AAG\|GTATGGTTTG...TGATCTTTATTG/AATTTGCTGATC...TGCAG\|TAT	0	1	43.035
99339622	GT-AG	0.0008230868987983	122	rna-XM_037636245.1 18602085	5	1567046	1567167	Jatropha curcas 180498	GGA\|GTATGATATC...CCAGTATTGACA/CAGTTATTTACT...TGCAG\|GTT	0	1	53.43
99339623	GT-AG	0.0006291074372669	163	rna-XM_037636245.1 18602085	6	1567324	1567486	Jatropha curcas 180498	GAG\|GTCTTTTCTT...CCTTTTTTATTT/TTTTTATTTACT...TATAG\|GCA	0	1	64.241
99339624	GT-AG	1.000000099473604e-05	97	rna-XM_037636245.1 18602085	7	1567699	1567795	Jatropha curcas 180498	TAG\|GTTCTAAATG...CATTTTTTGAGT/CATTTTTTGAGT...CGCAG\|TGC	2	1	78.933
99339625	GT-AG	1.000000099473604e-05	199	rna-XM_037636245.1 18602085	8	1567898	1568096	Jatropha curcas 180498	CCG\|GTATGGGAAT...CGCTTTTCAATC/TCGCTTTTCAAT...TCCAG\|GTC	2	1	86.001

Advanced export

JSON shape: default, array, newline-delimited, object

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);