WtMTA: introns: 10 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 18602076

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
99339544	GT-AG	1.000000099473604e-05	913	rna-XM_012211189.3 18602076	1	38632	39544	Jatropha curcas 180498	CAG\|GTTGGTTTAG...TTCATTTTGACT/AATAGTTTCATT...CCCAG\|GTC	2	1	20.258
99339545	GT-AG	1.000000099473604e-05	321	rna-XM_012211189.3 18602076	2	39944	40264	Jatropha curcas 180498	CAG\|GTAATGCAAT...CTGTTCTGAATG/ACTGTTCTGAAT...AACAG\|TGA	2	1	40.879
99339546	GT-AG	1.000000099473604e-05	155	rna-XM_012211189.3 18602076	3	40353	40507	Jatropha curcas 180498	CAG\|GTAATTTGCC...GCATATTTAATC/TTTTCCCTTATC...AACAG\|GAG	0	1	45.426
99339547	GT-AG	0.0004828026801164	152	rna-XM_012211189.3 18602076	4	40571	40722	Jatropha curcas 180498	CTG\|GTATGGATTA...CCAGCTTTGATA/CCAGCTTTGATA...CTTAG\|AGT	0	1	48.682
99339548	GT-AG	0.0002535608338537	102	rna-XM_012211189.3 18602076	5	40884	40985	Jatropha curcas 180498	CAG\|GTATTTAAGA...GTTTCTTCAATT/TCAATTTTCATA...GACAG\|GGA	2	1	57.003
99339549	GT-AG	0.0123975557994657	196	rna-XM_012211189.3 18602076	6	41062	41257	Jatropha curcas 180498	CAT\|GTACATTTCA...TCTATTTTGGCT/TTTTGGCTTATG...ATCAG\|ATT	0	1	60.93
99339550	GT-AG	0.8140272737207818	270	rna-XM_012211189.3 18602076	7	41318	41587	Jatropha curcas 180498	GAG\|GTATCCGCTT...ATTTCTTTTATG/ATTTCTTTTATG...ATCAG\|GTT	0	1	64.031
99339551	GT-AG	2.0325617812340487e-05	96	rna-XM_012211189.3 18602076	8	41696	41791	Jatropha curcas 180498	GGG\|GTGAGCTTTT...TCAGCCTTAAAG/ATTCATCTGATT...AACAG\|GTT	0	1	69.612
99339552	GT-AG	0.0253102231215767	551	rna-XM_012211189.3 18602076	9	42029	42579	Jatropha curcas 180498	CCG\|GTATATTTTT...CGTCAATTAACT/CGTCAATTAACT...AGCAG\|CCC	0	1	81.86
99339553	GT-AG	2.880060221558499e-05	74	rna-XM_012211189.3 18602076	10	42669	42742	Jatropha curcas 180498	AAG\|GTAACAACAT...TTAACTTTGATG/TCTTTATTAACT...TGCAG\|GGA	2	1	86.46

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);