WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 17869726

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
95651098	GT-AG	0.000196620877282	58	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1370235 17869726	1	649227	649284	Hydnum rufescens 139363	CAG\|GTATTTATTC...GTGTGTTCAAAT/CGTGTGTTCAAA...GTCAG\|CAA	2	1	3.667
95651099	GT-AG	1.000000099473604e-05	70	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1370235 17869726	2	649077	649146	Hydnum rufescens 139363	TGG\|GTGAACATCT...GTGTTCGTATTC/CGTATTCTAACC...GGCAG\|GTT	1	1	10.333
95651100	GT-AG	0.0003050058121526	68	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1370235 17869726	3	648701	648768	Hydnum rufescens 139363	CAT\|GTACGTCCGT...ATGATTTTGACC/ATGATTTTGACC...TGCAG\|TAT	0	1	36.0
95651101	GT-AG	6.189982415721938e-05	55	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1370235 17869726	4	648328	648382	Hydnum rufescens 139363	CAG\|GTATTGATCT...TATATATTAAAC/TATATATTAAAC...TCAAG\|ATC	0	1	62.5
95651102	GT-AG	0.0020427277826424	92	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1370235 17869726	5	648125	648216	Hydnum rufescens 139363	GAC\|GTCCATTTGG...TCGGCCTTCACC/GTACTCTTCACC...CAAAG\|ATA	0	1	71.75
95651103	GT-AG	1.000000099473604e-05	80	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1370235 17869726	6	647968	648047	Hydnum rufescens 139363	TGC\|GTAAGTCTGT...CGGGTATCAACA/CCGGGTATCAAC...TCTAG\|AAT	2	1	78.167
95651104	GT-AG	1.000000099473604e-05	54	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1370235 17869726	7	647809	647862	Hydnum rufescens 139363	TCA\|GTCCAGAAGA...CGGTACTTAGAA/CCGGTACTTAGA...GGCAG\|TGG	2	1	86.917

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);