WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 17869722

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
95651065	GC-AG	1.070374153972476e-05	52	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1404739 17869722	1	737378	737429	Hydnum rufescens 139363	TCG\|GCATGTCATC...GTATCCTGAAGT/AAAGAACTCACT...CACAG\|ACA	0	1	2.309
95651066	GT-AG	0.0028067301485	60	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1404739 17869722	2	737255	737314	Hydnum rufescens 139363	ATG\|GTATTTGTAA...TTAACTTTGAAC/CCATTATTAACT...GTCAG\|AAA	0	1	7.159
95651067	GT-AG	0.0013524409521959	52	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1404739 17869722	3	737158	737209	Hydnum rufescens 139363	GCT\|GTACGTTGTT...ATCTACTTGGCG/ACAAAACCCATC...TTTAG\|GCA	0	1	10.624
95651068	GT-AG	1.000000099473604e-05	55	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1404739 17869722	4	736810	736864	Hydnum rufescens 139363	GGA\|GTAAGACGAA...TGTGCCATATTA/AGGTGTATCATT...TACAG\|GTT	2	1	33.179
95651069	GC-AG	1.000000099473604e-05	54	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1404739 17869722	5	736643	736696	Hydnum rufescens 139363	CTG\|GCATGTAAAT...GGTTCTCTAACG/GGTTCTCTAACG...TTTAG\|ACA	1	1	41.878
95651070	GT-AG	1.000000099473604e-05	53	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1404739 17869722	6	736275	736327	Hydnum rufescens 139363	GCG\|GTGAGGGCAG...TCGTCCATATAA/ATATAACTTATG...GTTAG\|GCC	1	1	66.128
95651071	GT-AG	1.000000099473604e-05	59	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1404739 17869722	7	735965	736023	Hydnum rufescens 139363	AAT\|GTGAGTTTGT...CCTGCCTTTGCT/TTCGTGCTCAGG...CTCAG\|GTG	0	1	85.45

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);