WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 17869699

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
95650918	GT-AG	1.000000099473604e-05	134	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1357026 17869699	1	542136	542269	Hydnum rufescens 139363	CTG\|GTAGGTTCGC...CTGTTCTTTGTG/TTTGTGCTGAGA...TGTAG\|CGC	0	1	3.817
95650919	GT-AG	0.0001231556098257	130	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1357026 17869699	2	542383	542512	Hydnum rufescens 139363	CTC\|GTAGAGTTTC...CTTCTCGTACTC/TTCTGGTTCATC...TATAG\|TTT	2	1	11.005
95650920	GT-AG	0.000106991234645	234	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1357026 17869699	3	543163	543396	Hydnum rufescens 139363	ATG\|GTACGTTTAT...ATATTCTGGGCT/TCTGGGCTGAGC...CACAG\|ATC	1	1	52.354
95650921	GT-AG	1.000000099473604e-05	91	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1357026 17869699	4	543616	543706	Hydnum rufescens 139363	AAC\|GTCAGTCAAT...TCTGCCTTCTAT/CCTTCTATCAGG...CGCAG\|ATT	1	1	66.285
95650922	GT-AG	0.0003039702686128	72	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1357026 17869699	5	543842	543913	Hydnum rufescens 139363	ACT\|GTAAGTTTTC...GTCTCCTCACAT/GGTCTCCTCACA...TCTAG\|GTG	1	1	74.873
95650923	GT-AG	1.000000099473604e-05	142	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1357026 17869699	6	544038	544179	Hydnum rufescens 139363	TGA\|GTGAGTATCT...TATACCTTTCTG/TGTGAAATCATC...CGCAG\|TAA	2	1	82.761
95650924	GT-AG	0.0011732535361596	132	rna-gnl\|WGS:WIOR\|BS47DRAFT_mRNA1357026 17869699	7	544259	544390	Hydnum rufescens 139363	AGG\|GTATGTTAAT...CCATTTTTATTG/TCCATTTTTATT...GATAG\|GGA	0	1	87.786

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);