introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 1767278

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
10060335 GT-AG 0 1.000000099473604e-05 81 AATE013205-RA 1767278 1 15580605 15580685 Anopheles atroparvus 41427 TTG|GTAGGTAGCA...GCTTCCCTGGCA/CTGGCACTGACT...CACAG|GAT 2 1 4.552
10060336 GT-AG 0 0.0042515340398792 2748 AATE013205-RA 1767278 2 15580814 15583561 Anopheles atroparvus 41427 GGA|GTAAGTTTGT...ATTTCCTTACCT/GATTTCCTTACC...CTCAG|CGG 1 1 8.04
10060337 GT-AG 0 0.0002902245334565 66 AATE013205-RA 1767278 3 15583711 15583776 Anopheles atroparvus 41427 AAG|GTACGCATCA...TCATCCTTGTAC/CAGCGTCTCATC...TTCAG|ATC 0 1 12.101
10060338 GT-AG 0 1.000000099473604e-05 1001 AATE013205-RA 1767278 4 15584168 15585168 Anopheles atroparvus 41427 TAG|GTAAGGCAAT...CACTTTTTCGTT/AATGAACTCACT...GGCAG|GAA 1 1 22.758
10060339 GT-AG 0 1.000000099473604e-05 79 AATE013205-RA 1767278 5 15585377 15585455 Anopheles atroparvus 41427 TGG|GTGAGTGGCG...TCCTCCTAAATT/TTCCTCCTAAAT...TGCAG|CCG 2 1 28.427
10060340 GT-AG 0 2.7921449665754263e-05 89 AATE013205-RA 1767278 6 15586026 15586114 Anopheles atroparvus 41427 CTG|GTACGCCGCC...CGCATCTCACCA/ACGCATCTCACC...TTCAG|CTT 2 1 43.963
10060341 GT-AG 0 1.000000099473604e-05 63 AATE013205-RA 1767278 7 15586806 15586868 Anopheles atroparvus 41427 AAG|GTAGGACCAG...GCATGTTTAACC/GCATGTTTAACC...CCCAG|GGC 0 1 62.796
10060342 GT-AG 0 1.000000099473604e-05 515 AATE013205-RA 1767278 8 15587253 15587767 Anopheles atroparvus 41427 CAG|GTAAGATTAT...TTAGTTTTCTCG/TCGAGATTCACA...TGCAG|ATT 0 1 73.262

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);