WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 17645862

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
94519695	GT-AG	0.0029662456095008	4698	rna-XM_046817204.1 17645862	1	59450851	59455548	Homalodisca vitripennis 197043	ATG\|GTATGTTATT...AAACCGTTAGCC/AAGTAGGTTATG...TGTAG\|AGT	1	1	80.933
94519696	GT-AG	1.000000099473604e-05	22651	rna-XM_046817204.1 17645862	2	59455651	59478301	Homalodisca vitripennis 197043	AAG\|GTAAATGCTA...CCACACTTGACG/ACAGTGTTCACT...TATAG\|GGT	1	1	82.507
94519697	GT-AG	0.0113215758643532	4258	rna-XM_046817204.1 17645862	3	59478490	59482747	Homalodisca vitripennis 197043	AAG\|GTATGTTTTT...CATACTTTGAAA/TTAGTTTTCATA...GACAG\|GTA	0	1	85.41
94519698	GT-AG	1.000000099473604e-05	3602	rna-XM_046817204.1 17645862	4	59482922	59486523	Homalodisca vitripennis 197043	GAT\|GTGAGTATAT...AAGTTTTTTCCT/TTTTTCCTGAGG...GGCAG\|TCA	0	1	88.096
94519699	GT-AG	1.000000099473604e-05	4817	rna-XM_046817204.1 17645862	5	59486679	59491495	Homalodisca vitripennis 197043	CAG\|GTAATGTTTA...GTATTTGTAAAA/AAAAATCTGATA...ATTAG\|GGA	2	1	90.489
94519700	GT-AG	1.000000099473604e-05	1501	rna-XM_046817204.1 17645862	6	59491635	59493135	Homalodisca vitripennis 197043	GAG\|GTAGGATCAT...ATAGTTCTACAG/AATGTGTCCATT...CCCAG\|ATT	0	1	92.635
94519701	GT-AG	1.000000099473604e-05	877	rna-XM_046817204.1 17645862	7	59493325	59494201	Homalodisca vitripennis 197043	CAG\|GTACAACTCA...TTATTTGTATTA/TAAGTATTCATC...ACCAG\|CTG	0	1	95.553
94519702	GT-AG	9.690510616445762e-05	1173	rna-XM_046817204.1 17645862	8	59494343	59495515	Homalodisca vitripennis 197043	GTT\|GTAAGTCTTA...AATACTGTAATA/AATACTGTAATA...TACAG\|AAA	0	1	97.73

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);