WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 17605127

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
94264659	GT-AG	0.0005373624144658	65520	rna-XM_040058898.1 17605127	2	89829803	89895322	Hirundo rustica 43150	GAG\|GTATGTAGCT...TGTATTTTAATA/TGTATTTTAATA...TGCAG\|ACA	1	1	1.462
94264660	GT-AG	1.000000099473604e-05	19943	rna-XM_040058898.1 17605127	3	89895377	89915319	Hirundo rustica 43150	GAG\|GTAATAACCA...TATTTTTTATTC/ATATTTTTTATT...AACAG\|AAA	1	1	2.12
94264661	GT-AG	4.588988999692689e-05	6257	rna-XM_040058898.1 17605127	4	89921271	89927527	Hirundo rustica 43150	AAG\|GTACTTAAGC...CTAATTTTAATG/CTAATTTTAATG...TTCAG\|AGA	0	1	74.631
94264662	GC-AG	1.000000099473604e-05	1353	rna-XM_040058898.1 17605127	5	89927662	89929014	Hirundo rustica 43150	AGG\|GCAAGTATTG...ATTGCCTTACTC/TTAGAACTGATT...ACTAG\|GTA	2	1	76.264
94264663	GT-AG	1.000000099473604e-05	1990	rna-XM_040058898.1 17605127	6	89929191	89931180	Hirundo rustica 43150	AAG\|GTAAGGCTAA...TAATTTTTATTA/ATAATTTTTATT...TTAAG\|GAA	1	1	78.409
94264664	GT-AG	1.000000099473604e-05	10652	rna-XM_040058898.1 17605127	7	89931286	89941937	Hirundo rustica 43150	TTG\|GTAAGAAATG...ATTGTCTTAACT/ATTGTCTTAACT...TGCAG\|GTG	1	1	79.688
94264665	GT-AG	1.000000099473604e-05	2847	rna-XM_040058898.1 17605127	8	89942456	89945302	Hirundo rustica 43150	AAG\|GTAGGAGTGT...GCCACTTTAACA/TTTAACATGACT...CCCAG\|AGC	0	1	86.0
94276372	GT-AG	1.000000099473604e-05	4330	rna-XM_040058898.1 17605127	1	89825326	89829655	Hirundo rustica 43150	GCG\|GTGAGTTTCC...TTTTTCTTATTG/GTTTTTCTTATT...TTTAG\|CAT		0	0.975

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);