introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

6 rows where transcript_id = 17327678

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92593071 GT-AG 0 0.0003776510964068 104 rna-XM_020571404.1 17327678 1 769558 769661 Heterostelium album 2086695 TTT|GTAAATATCA...TTTATTTTATAT/CATATATTAATT...TATAG|AGA 2 1 3.823
92593072 GT-AG 0 0.0001869921443828 86 rna-XM_020571404.1 17327678 2 769941 770026 Heterostelium album 2086695 AAA|GTAAATATAA...TTAATCTTAATT/TTAATCTTAATT...ACTAG|TAA 2 1 12.355
92593073 GT-AG 0 1.000000099473604e-05 282 rna-XM_020571404.1 17327678 3 770169 770450 Heterostelium album 2086695 CAT|GTAAAGTCAG...GAATTCAAAACA/TTGGAATTCAAA...ATCAG|ATC 0 1 16.697
92593074 GT-AG 0 0.0004654523696227 58 rna-XM_020571404.1 17327678 4 771906 771963 Heterostelium album 2086695 GAG|GTATGTATAT...ATATATTTGATT/ATATATTTGATT...AATAG|TTA 0 1 61.193
92593075 GT-AG 0 0.0001265536988057 65 rna-XM_020571404.1 17327678 5 772181 772245 Heterostelium album 2086695 CAC|GTAAGTTATT...TAATTTTTAAAC/TTATTTATAATT...ATTAG|TAT 1 1 67.829
92593076 GT-AG 0 9.386879057952854e-05 65 rna-XM_020571404.1 17327678 6 772485 772549 Heterostelium album 2086695 TCA|GTAAGTTATT...TATATTATAATT/TTTCAATTAATT...AATAG|GAA 0 1 75.138

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);