introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 17327656

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92592977 GT-AG 0 1.000000099473604e-05 141 rna-XM_020571595.1 17327656 1 1293453 1293593 Heterostelium album 2086695 TCT|GTAAGTAAAA...ATTAATTTATCA/AATTAATTAATT...ATTAG|TAA 2 1 16.18
92592978 GT-AG 0 0.0002329699100508 88 rna-XM_020571595.1 17327656 2 1293682 1293769 Heterostelium album 2086695 ATA|GTAAGTTATT...CAATCTTTATCT/AATAATCTCAAT...TATAG|GAA 0 1 18.558
92592979 GT-AG 0 1.000000099473604e-05 86 rna-XM_020571595.1 17327656 3 1293874 1293959 Heterostelium album 2086695 AAA|GTAAGAAAAT...AACTATATAACT/ATATAACTAATA...AATAG|TTT 2 1 21.367
92592980 GT-AG 0 1.000000099473604e-05 177 rna-XM_020571595.1 17327656 4 1294955 1295131 Heterostelium album 2086695 AGT|GTAAGATCTA...AATTCTCTGTCT/TACAATCATATA...ACAAG|CTA 1 1 48.244
92592981 GT-AG 0 3.740578496145241e-05 88 rna-XM_020571595.1 17327656 5 1296343 1296430 Heterostelium album 2086695 AGA|GTAAGTTAAA...TGTTTATTAAAT/CATATGTTTATT...TTTAG|ATG 0 1 80.956
92592982 GT-AG 0 0.0001479140710835 72 rna-XM_020571595.1 17327656 6 1296723 1296794 Heterostelium album 2086695 ATA|GTAAGTGTTT...CTTTTTTTATTT/ACTTTTTTTATT...AATAG|ATA 1 1 88.844
92592983 GT-AG 0 4.804451001597921e-05 80 rna-XM_020571595.1 17327656 7 1297022 1297101 Heterostelium album 2086695 ATG|GTAAATATTA...AATTCATTAATT/TATTAATTCATT...AATAG|ATG 0 1 94.976

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);