WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 17327645

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
92592915	GT-AG	1.000000099473604e-05	476	rna-XM_020571670.1 17327645	1	1502817	1503292	Heterostelium album 2086695	TGG\|GTTAGTGGGG...ATGATTGTGATG/CGTAAATTCATT...CAAAG\|ATT	1	1	0.232
92592916	GT-AG	1.000000099473604e-05	462	rna-XM_020571670.1 17327645	2	1502240	1502701	Heterostelium album 2086695	TAT\|GTAAGTATAG...TAGATAATGACA/TAGATAATGACA...AATAG\|TGA	2	1	2.9
92592917	GT-AG	0.0076829711731392	90	rna-XM_020571670.1 17327645	3	1501774	1501863	Heterostelium album 2086695	CAA\|GTATGTTGTT...ATATATTTAATA/TATTTATTTATT...TATAG\|ATT	0	1	11.621
92592918	GT-AG	0.0138999673683827	95	rna-XM_020571670.1 17327645	4	1501370	1501464	Heterostelium album 2086695	TAT\|GTATGTTATA...AGATTGTTAACA/TTAATATTAATT...AATAG\|GAT	0	1	18.789
92592919	GT-AG	0.0001596589858768	112	rna-XM_020571670.1 17327645	5	1500989	1501100	Heterostelium album 2086695	AGT\|GTTAGCTTCC...ATTCCATTAAAC/CGATCTCTAATC...AATAG\|CAT	2	1	25.029
92592920	GT-AG	0.0115652102637964	378	rna-XM_020571670.1 17327645	6	1500101	1500478	Heterostelium album 2086695	ATT\|GTATTTGACG...AAAGCTTTAGAT/GATTTACAAATT...TTAAG\|CAT	2	1	36.859
92592921	GT-AG	0.0002041657829226	117	rna-XM_020571670.1 17327645	7	1499417	1499533	Heterostelium album 2086695	TAT\|GTATAGTGAG...TGGTTCTACACG/AATACACTCAGT...CATAG\|GAA	2	1	50.012
92592922	GT-AG	0.0012013836790708	59	rna-XM_020571670.1 17327645	8	1498904	1498962	Heterostelium album 2086695	AAT\|GTAAGTTTTA...ATTGCCTTATTA/GATTGCCTTATT...TATAG\|GAT	0	1	60.543

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);