introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
4 rows where transcript_id = 17327632
This data as json, CSV (advanced)
Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92592865 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-XM_020571641.1 17327632 | 1 | 1424114 | 1424180 | Heterostelium album 2086695 | AAA|GTAAGTGTAT...ATATCTTTTTTT/ATATTACTAATA...TTTAG|AAC | 2 | 1 | 7.752 |
92592866 | GT-AG | 0 | 2.2477513584616423e-05 | 210 | rna-XM_020571641.1 17327632 | 2 | 1423297 | 1423506 | Heterostelium album 2086695 | CTC|GTAAATCTAC...AAAATCTCACTG/GAAAATCTCACT...AACAG|CCA | 0 | 1 | 19.144 |
92592867 | GT-AG | 0 | 1.000000099473604e-05 | 123 | rna-XM_020571641.1 17327632 | 3 | 1422981 | 1423103 | Heterostelium album 2086695 | AAG|GTAATAACTA...TTTTTCTAGATT/GGTTTGTTTATG...GGTAG|ATA | 1 | 1 | 22.767 |
92592868 | GT-AG | 0 | 1.000000099473604e-05 | 79 | rna-XM_020571641.1 17327632 | 4 | 1419360 | 1419438 | Heterostelium album 2086695 | AAA|GTAAGAGTTA...ATTATATTAACA/ATTATATTAACA...ACTAG|GAA | 0 | 1 | 89.245 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);