introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 17327630

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id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92592853 GT-AG 0 8.317263670973711e-05 843 rna-XM_020571684.1 17327630 1 1534345 1535187 Heterostelium album 2086695 TAT|GTAATATATA...GTTTTTTTAGAA/AGTTTTTTTAGA...AATAG|TTT 2 1 0.145
92592854 GT-AG 0 1.534106393011499e-05 1001 rna-XM_020571684.1 17327630 2 1537591 1538591 Heterostelium album 2086695 ATG|GTAATATATT...GTTTTTTTATTT/TGTTTTTTTATT...AAAAG|TCA 2 1 43.773
92592855 GT-AG 0 0.0002337801381534 56 rna-XM_020571684.1 17327630 3 1538685 1538740 Heterostelium album 2086695 ATA|GTAAGTATTA...TTATTTTTAGAA/TTAATTTTTACT...ATCAG|CTA 2 1 45.461
92592856 GT-AG 0 0.0850707908732679 58 rna-XM_020571684.1 17327630 4 1539322 1539379 Heterostelium album 2086695 ATT|GTAACTATAT...TTATTTTTAATT/TTATTTTTAATT...TTTAG|TAC 1 1 56.009
92592857 GT-AG 0 1.5864577492778098e-05 67 rna-XM_020571684.1 17327630 5 1539668 1539734 Heterostelium album 2086695 CAT|GTAAGTAATA...TTTATTTTATTT/CTTTATTTTATT...TTTAG|ATA 1 1 61.238
92592858 GT-AG 0 8.937284253181313e-05 67 rna-XM_020571684.1 17327630 6 1539915 1539981 Heterostelium album 2086695 CCA|GTAAGTAAAT...TATTTTTTAACT/CTTTGACTCATT...AAAAG|ATG 1 1 64.506
92592859 GT-AG 0 0.0001245452432011 57 rna-XM_020571684.1 17327630 7 1540108 1540164 Heterostelium album 2086695 ATT|GTAAGTTAAA...ATTTCTTTATAA/ATAATATTTATT...TTTAG|TAT 1 1 66.794
92592860 GT-AG 0 0.0795783294058258 70 rna-XM_020571684.1 17327630 8 1540783 1540852 Heterostelium album 2086695 TAA|GTATGTATTT...TATTTTTTATTT/TTTTTATTAATT...CTTAG|AAA 1 1 78.014

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);