introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
13 rows where transcript_id = 17327617
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92592750 | GT-AG | 0 | 0.0017837583014241 | 1225 | rna-XM_020571189.1 17327617 | 1 | 175133 | 176357 | Heterostelium album 2086695 | GTA|GTATGATGAT...AAATCTTTACAT/TAAATCTTTACA...TGAAG|TTA | 0 | 1 | 0.087 |
92592751 | GT-AG | 0 | 0.002648479130335 | 610 | rna-XM_020571189.1 17327617 | 2 | 176401 | 177010 | Heterostelium album 2086695 | AAG|GTTTATTTGA...TTTTTTTTATTA/CTTTTTTTTATT...AATAG|ATA | 1 | 1 | 0.711 |
92592752 | GT-AG | 0 | 1.000000099473604e-05 | 87 | rna-XM_020571189.1 17327617 | 3 | 177742 | 177828 | Heterostelium album 2086695 | TTT|GTAAGTAATA...TCTATTATAATT/AATTGACTAACT...AATAG|GGA | 0 | 1 | 11.319 |
92592753 | GT-AG | 0 | 0.0100017043621082 | 71 | rna-XM_020571189.1 17327617 | 4 | 177916 | 177986 | Heterostelium album 2086695 | TCT|GTATGTCTAT...TGTATTGTAATT/TGTATTGTAATT...TATAG|GGA | 0 | 1 | 12.582 |
92592754 | GT-AG | 0 | 0.0004642924937131 | 455 | rna-XM_020571189.1 17327617 | 5 | 178061 | 178515 | Heterostelium album 2086695 | CTC|GTTTGTATCG...TTGATATTAATG/ATGGTATTGATA...TATAG|TTG | 2 | 1 | 13.655 |
92592755 | GT-AG | 0 | 1.000000099473604e-05 | 78 | rna-XM_020571189.1 17327617 | 6 | 178633 | 178710 | Heterostelium album 2086695 | AGG|GTAAAGTAGA...GTTGTTTTATTT/TGTTTATTAATT...TTTAG|AAA | 2 | 1 | 15.353 |
92592756 | GT-AG | 0 | 0.0047511860416195 | 173 | rna-XM_020571189.1 17327617 | 7 | 179265 | 179437 | Heterostelium album 2086695 | ATG|GTATGTCTAC...GTATCTTTATTA/AGTATCTTTATT...GTTAG|CAT | 1 | 1 | 23.393 |
92592757 | GT-AG | 0 | 0.0012400540773084 | 102 | rna-XM_020571189.1 17327617 | 8 | 179467 | 179568 | Heterostelium album 2086695 | AAT|GTATGTGTCT...TTTGTTTCAATT/GTTTGTTTCAAT...TATAG|TAT | 0 | 1 | 23.814 |
92592758 | GT-AG | 0 | 5.978136667907869e-05 | 74 | rna-XM_020571189.1 17327617 | 9 | 179830 | 179903 | Heterostelium album 2086695 | GAA|GTAAGTATTA...TTAACATTAACA/AACATATTAACA...TATAG|ATA | 0 | 1 | 27.601 |
92592759 | GT-AG | 0 | 0.1195749722359904 | 96 | rna-XM_020571189.1 17327617 | 10 | 180039 | 180134 | Heterostelium album 2086695 | GCT|GTATGTTATG...ATATTTTTACTA/TTTTTACTAACA...TTTAG|GCA | 0 | 1 | 29.56 |
92592760 | GT-AG | 0 | 0.0028226056839285 | 330 | rna-XM_020571189.1 17327617 | 11 | 183977 | 184306 | Heterostelium album 2086695 | CGA|GTATGTCTCA...TCCACTTCAAAT/CGAATGTTTATG...TATAG|TAG | 2 | 1 | 85.314 |
92592761 | GT-AG | 0 | 0.0692815519905675 | 135 | rna-XM_020571189.1 17327617 | 12 | 184488 | 184622 | Heterostelium album 2086695 | CCG|GTATCATCGA...ACAACCGTACTG/TCGCTACGCACC...ACAAG|ATC | 0 | 1 | 87.941 |
92592762 | GT-AG | 0 | 0.0004505268748533 | 336 | rna-XM_020571189.1 17327617 | 13 | 185425 | 185760 | Heterostelium album 2086695 | TCT|GTCTGTGGGT...TGTTTTTTATTT/CTGTTTTTTATT...AAAAG|GTG | 1 | 1 | 99.579 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);