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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

13 rows where transcript_id = 17327617

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92592750 GT-AG 0 0.0017837583014241 1225 rna-XM_020571189.1 17327617 1 175133 176357 Heterostelium album 2086695 GTA|GTATGATGAT...AAATCTTTACAT/TAAATCTTTACA...TGAAG|TTA 0 1 0.087
92592751 GT-AG 0 0.002648479130335 610 rna-XM_020571189.1 17327617 2 176401 177010 Heterostelium album 2086695 AAG|GTTTATTTGA...TTTTTTTTATTA/CTTTTTTTTATT...AATAG|ATA 1 1 0.711
92592752 GT-AG 0 1.000000099473604e-05 87 rna-XM_020571189.1 17327617 3 177742 177828 Heterostelium album 2086695 TTT|GTAAGTAATA...TCTATTATAATT/AATTGACTAACT...AATAG|GGA 0 1 11.319
92592753 GT-AG 0 0.0100017043621082 71 rna-XM_020571189.1 17327617 4 177916 177986 Heterostelium album 2086695 TCT|GTATGTCTAT...TGTATTGTAATT/TGTATTGTAATT...TATAG|GGA 0 1 12.582
92592754 GT-AG 0 0.0004642924937131 455 rna-XM_020571189.1 17327617 5 178061 178515 Heterostelium album 2086695 CTC|GTTTGTATCG...TTGATATTAATG/ATGGTATTGATA...TATAG|TTG 2 1 13.655
92592755 GT-AG 0 1.000000099473604e-05 78 rna-XM_020571189.1 17327617 6 178633 178710 Heterostelium album 2086695 AGG|GTAAAGTAGA...GTTGTTTTATTT/TGTTTATTAATT...TTTAG|AAA 2 1 15.353
92592756 GT-AG 0 0.0047511860416195 173 rna-XM_020571189.1 17327617 7 179265 179437 Heterostelium album 2086695 ATG|GTATGTCTAC...GTATCTTTATTA/AGTATCTTTATT...GTTAG|CAT 1 1 23.393
92592757 GT-AG 0 0.0012400540773084 102 rna-XM_020571189.1 17327617 8 179467 179568 Heterostelium album 2086695 AAT|GTATGTGTCT...TTTGTTTCAATT/GTTTGTTTCAAT...TATAG|TAT 0 1 23.814
92592758 GT-AG 0 5.978136667907869e-05 74 rna-XM_020571189.1 17327617 9 179830 179903 Heterostelium album 2086695 GAA|GTAAGTATTA...TTAACATTAACA/AACATATTAACA...TATAG|ATA 0 1 27.601
92592759 GT-AG 0 0.1195749722359904 96 rna-XM_020571189.1 17327617 10 180039 180134 Heterostelium album 2086695 GCT|GTATGTTATG...ATATTTTTACTA/TTTTTACTAACA...TTTAG|GCA 0 1 29.56
92592760 GT-AG 0 0.0028226056839285 330 rna-XM_020571189.1 17327617 11 183977 184306 Heterostelium album 2086695 CGA|GTATGTCTCA...TCCACTTCAAAT/CGAATGTTTATG...TATAG|TAG 2 1 85.314
92592761 GT-AG 0 0.0692815519905675 135 rna-XM_020571189.1 17327617 12 184488 184622 Heterostelium album 2086695 CCG|GTATCATCGA...ACAACCGTACTG/TCGCTACGCACC...ACAAG|ATC 0 1 87.941
92592762 GT-AG 0 0.0004505268748533 336 rna-XM_020571189.1 17327617 13 185425 185760 Heterostelium album 2086695 TCT|GTCTGTGGGT...TGTTTTTTATTT/CTGTTTTTTATT...AAAAG|GTG 1 1 99.579

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 48.317ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)