introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
16 rows where transcript_id = 17285748
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354652 | GT-AG | 0 | 1.000000099473604e-05 | 84 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 1 | 1407986 | 1408069 | Hesseltinella vesiculosa 101127 | CTG|GTAGGGCTTT...TTTTTCTTTTTT/TTTTTTCTCACG...ACTAG|GGC | 2 | 1 | 7.9 |
92354653 | GT-AG | 0 | 1.000000099473604e-05 | 93 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 2 | 1407832 | 1407924 | Hesseltinella vesiculosa 101127 | TTG|GTAAGGGATT...GCATCCATGACT/CCATGACTGACA...TTTAG|ACC | 0 | 1 | 10.685 |
92354654 | GT-AG | 0 | 1.000000099473604e-05 | 77 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 3 | 1407743 | 1407819 | Hesseltinella vesiculosa 101127 | TTG|GTAATGCTTT...TTTTTTTTGTTT/CAGAGGCTGATG...CTCAG|TAC | 0 | 1 | 11.233 |
92354655 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 4 | 1407586 | 1407640 | Hesseltinella vesiculosa 101127 | AAG|GTAAGATAAA...TTGATATTGCCG/TCGCAGCTAAAA...GGTAG|GAA | 0 | 1 | 15.89 |
92354656 | GT-AG | 0 | 1.000000099473604e-05 | 81 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 5 | 1407429 | 1407509 | Hesseltinella vesiculosa 101127 | TTG|GTAAGAAAAC...TTCTCTTTTGCT/CAGTGCCTGACT...GGTAG|TAC | 1 | 1 | 19.361 |
92354657 | GT-AG | 0 | 0.0001685610484718 | 84 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 6 | 1407230 | 1407313 | Hesseltinella vesiculosa 101127 | TGG|GTAACTGAAA...TTTTTCTTTTTT/CAAGGTCTGACC...TCTAG|CCG | 2 | 1 | 24.612 |
92354658 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 7 | 1407048 | 1407116 | Hesseltinella vesiculosa 101127 | ATG|GTAAGAACGT...ACTTCATTGACA/TTTTTTTTCAAT...CTCAG|TCA | 1 | 1 | 29.772 |
92354659 | GT-AG | 0 | 0.0004602836144358 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 8 | 1406953 | 1407008 | Hesseltinella vesiculosa 101127 | CCA|GTAAGCATCA...CTCCCATTGATT/CATTGATTCACC...CACAG|TTC | 1 | 1 | 31.553 |
92354660 | GT-AG | 0 | 0.0400435052210947 | 65 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 9 | 1406850 | 1406914 | Hesseltinella vesiculosa 101127 | ATG|GTATGTTGCC...GTTTTTTTAACA/GTTTTTTTAACA...ACTAG|CTG | 0 | 1 | 33.288 |
92354661 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 10 | 1406529 | 1406582 | Hesseltinella vesiculosa 101127 | GAA|GTAAGAGGGA...GGCTCATGAACT/CATGAACTCATG...TCTAG|CAC | 0 | 1 | 45.479 |
92354662 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 11 | 1406400 | 1406452 | Hesseltinella vesiculosa 101127 | TCA|GTAAGGGACC...ACCTCCCTGTCT/CAGCGACTGACC...AACAG|TCA | 1 | 1 | 48.95 |
92354663 | GT-AG | 0 | 1.000000099473604e-05 | 46 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 12 | 1406173 | 1406218 | Hesseltinella vesiculosa 101127 | TCG|GTAAGACAGC...TTTCCATTGAAT/TTTCCATTGAAT...CCTAG|CTT | 2 | 1 | 57.215 |
92354664 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 13 | 1405776 | 1405843 | Hesseltinella vesiculosa 101127 | ATG|GTAAGATAGA...ATATTCTTATTC/CATATTCTTATT...TTTAG|ATC | 1 | 1 | 72.237 |
92354665 | GT-AG | 0 | 0.0001331802403017 | 55 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 14 | 1405596 | 1405650 | Hesseltinella vesiculosa 101127 | CAA|GTAAGCTTGT...TGGCACATGACC/CTCACGCTGATT...ATTAG|ACA | 0 | 1 | 77.945 |
92354666 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 15 | 1405315 | 1405372 | Hesseltinella vesiculosa 101127 | AAG|GTAAAAAAAA...TGATTTTTTTTT/CTCAAATTGATT...CTTAG|CTT | 1 | 1 | 88.128 |
92354667 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 | 16 | 1405204 | 1405275 | Hesseltinella vesiculosa 101127 | ATG|GTAAAAATGG...TCTTCTTTCATT/TCTTCTTTCATT...TCTAG|TTC | 1 | 1 | 89.909 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);