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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

16 rows where transcript_id = 17285748

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354652 GT-AG 0 1.000000099473604e-05 84 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 1 1407986 1408069 Hesseltinella vesiculosa 101127 CTG|GTAGGGCTTT...TTTTTCTTTTTT/TTTTTTCTCACG...ACTAG|GGC 2 1 7.9
92354653 GT-AG 0 1.000000099473604e-05 93 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 2 1407832 1407924 Hesseltinella vesiculosa 101127 TTG|GTAAGGGATT...GCATCCATGACT/CCATGACTGACA...TTTAG|ACC 0 1 10.685
92354654 GT-AG 0 1.000000099473604e-05 77 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 3 1407743 1407819 Hesseltinella vesiculosa 101127 TTG|GTAATGCTTT...TTTTTTTTGTTT/CAGAGGCTGATG...CTCAG|TAC 0 1 11.233
92354655 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 4 1407586 1407640 Hesseltinella vesiculosa 101127 AAG|GTAAGATAAA...TTGATATTGCCG/TCGCAGCTAAAA...GGTAG|GAA 0 1 15.89
92354656 GT-AG 0 1.000000099473604e-05 81 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 5 1407429 1407509 Hesseltinella vesiculosa 101127 TTG|GTAAGAAAAC...TTCTCTTTTGCT/CAGTGCCTGACT...GGTAG|TAC 1 1 19.361
92354657 GT-AG 0 0.0001685610484718 84 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 6 1407230 1407313 Hesseltinella vesiculosa 101127 TGG|GTAACTGAAA...TTTTTCTTTTTT/CAAGGTCTGACC...TCTAG|CCG 2 1 24.612
92354658 GT-AG 0 1.000000099473604e-05 69 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 7 1407048 1407116 Hesseltinella vesiculosa 101127 ATG|GTAAGAACGT...ACTTCATTGACA/TTTTTTTTCAAT...CTCAG|TCA 1 1 29.772
92354659 GT-AG 0 0.0004602836144358 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 8 1406953 1407008 Hesseltinella vesiculosa 101127 CCA|GTAAGCATCA...CTCCCATTGATT/CATTGATTCACC...CACAG|TTC 1 1 31.553
92354660 GT-AG 0 0.0400435052210947 65 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 9 1406850 1406914 Hesseltinella vesiculosa 101127 ATG|GTATGTTGCC...GTTTTTTTAACA/GTTTTTTTAACA...ACTAG|CTG 0 1 33.288
92354661 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 10 1406529 1406582 Hesseltinella vesiculosa 101127 GAA|GTAAGAGGGA...GGCTCATGAACT/CATGAACTCATG...TCTAG|CAC 0 1 45.479
92354662 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 11 1406400 1406452 Hesseltinella vesiculosa 101127 TCA|GTAAGGGACC...ACCTCCCTGTCT/CAGCGACTGACC...AACAG|TCA 1 1 48.95
92354663 GT-AG 0 1.000000099473604e-05 46 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 12 1406173 1406218 Hesseltinella vesiculosa 101127 TCG|GTAAGACAGC...TTTCCATTGAAT/TTTCCATTGAAT...CCTAG|CTT 2 1 57.215
92354664 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 13 1405776 1405843 Hesseltinella vesiculosa 101127 ATG|GTAAGATAGA...ATATTCTTATTC/CATATTCTTATT...TTTAG|ATC 1 1 72.237
92354665 GT-AG 0 0.0001331802403017 55 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 14 1405596 1405650 Hesseltinella vesiculosa 101127 CAA|GTAAGCTTGT...TGGCACATGACC/CTCACGCTGATT...ATTAG|ACA 0 1 77.945
92354666 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 15 1405315 1405372 Hesseltinella vesiculosa 101127 AAG|GTAAAAAAAA...TGATTTTTTTTT/CTCAAATTGATT...CTTAG|CTT 1 1 88.128
92354667 GT-AG 0 1.000000099473604e-05 72 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1298003 17285748 16 1405204 1405275 Hesseltinella vesiculosa 101127 ATG|GTAAAAATGG...TCTTCTTTCATT/TCTTCTTTCATT...TCTAG|TTC 1 1 89.909

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.547ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)