introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 17285747
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354640 | GT-AG | 0 | 1.000000099473604e-05 | 92 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 | 1 | 224860 | 224951 | Hesseltinella vesiculosa 101127 | TAG|GTAGGAATAC...TCATCATTAACC/CTTAATTTTATT...TGCAG|GGA | 1 | 1 | 3.85 |
92354641 | GT-AG | 0 | 0.0068404526159276 | 65 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 | 2 | 225026 | 225090 | Hesseltinella vesiculosa 101127 | GAG|GTAGCTCTCC...TTTTTCTTTGCA/TTTGACGTTATT...TCTAG|GCT | 0 | 1 | 7.201 |
92354642 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 | 3 | 225178 | 225245 | Hesseltinella vesiculosa 101127 | ATG|GTAAGCATGA...TAATCCTCCACT/ACGGAACTAATC...GTCAG|GAC | 0 | 1 | 11.141 |
92354643 | GT-AG | 0 | 3.773090333815076e-05 | 68 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 | 4 | 225308 | 225375 | Hesseltinella vesiculosa 101127 | CTG|GTAAACCTAT...AAGGTATTGACT/AAGGTATTGACT...CGTAG|CTG | 2 | 1 | 13.949 |
92354644 | GT-AG | 0 | 0.0140179943045896 | 81 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 | 5 | 225469 | 225549 | Hesseltinella vesiculosa 101127 | AAG|GTATATTCTC...ATTGTTTTATTA/CATTGTTTTATT...GGAAG|GCA | 2 | 1 | 18.161 |
92354645 | GT-AG | 0 | 1.000000099473604e-05 | 86 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 | 6 | 225726 | 225811 | Hesseltinella vesiculosa 101127 | GAG|GTACGTGCCA...TCATCTTTGTCG/GCGAAACTCATC...GTCAG|GCT | 1 | 1 | 26.132 |
92354646 | GT-AG | 0 | 1.000000099473604e-05 | 75 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 | 7 | 226099 | 226173 | Hesseltinella vesiculosa 101127 | AAG|GTAATGTCAT...TTTTTTTTAAAA/TTTTTTTTAAAA...AATAG|GGA | 0 | 1 | 39.13 |
92354647 | GT-AG | 0 | 0.0005184693563522 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 | 8 | 226262 | 226325 | Hesseltinella vesiculosa 101127 | ATG|GTATTGTCCA...TTTTTCTTCTTC/TATTGACTCACT...TATAG|TCT | 1 | 1 | 43.116 |
92354648 | GT-AG | 0 | 1.0078211803836564e-05 | 74 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 | 9 | 226355 | 226428 | Hesseltinella vesiculosa 101127 | AAT|GTAAGTTGGA...TCTCCTCTATTT/CTCAAACTTACA...TATAG|GCT | 0 | 1 | 44.429 |
92354649 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 | 10 | 226585 | 226640 | Hesseltinella vesiculosa 101127 | GAG|GTAATGGACA...GCTCCATTCATT/GCTCCATTCATT...TTTAG|GCC | 0 | 1 | 51.495 |
92354650 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 | 12 | 227404 | 227473 | Hesseltinella vesiculosa 101127 | GAA|GTAAAACAAT...TTTTCTTTCGTC/CGGTCTCTCACT...GACAG|AGC | 0 | 1 | 84.918 |
92354651 | GT-AG | 0 | 0.00123051338288 | 57 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 | 13 | 227639 | 227695 | Hesseltinella vesiculosa 101127 | GTG|GTATGTCTTT...TCCTATTTGATC/TTATTGTTCACA...TTTAG|TAC | 0 | 1 | 92.391 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);