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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 17285747

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354640 GT-AG 0 1.000000099473604e-05 92 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 1 224860 224951 Hesseltinella vesiculosa 101127 TAG|GTAGGAATAC...TCATCATTAACC/CTTAATTTTATT...TGCAG|GGA 1 1 3.85
92354641 GT-AG 0 0.0068404526159276 65 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 2 225026 225090 Hesseltinella vesiculosa 101127 GAG|GTAGCTCTCC...TTTTTCTTTGCA/TTTGACGTTATT...TCTAG|GCT 0 1 7.201
92354642 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 3 225178 225245 Hesseltinella vesiculosa 101127 ATG|GTAAGCATGA...TAATCCTCCACT/ACGGAACTAATC...GTCAG|GAC 0 1 11.141
92354643 GT-AG 0 3.773090333815076e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 4 225308 225375 Hesseltinella vesiculosa 101127 CTG|GTAAACCTAT...AAGGTATTGACT/AAGGTATTGACT...CGTAG|CTG 2 1 13.949
92354644 GT-AG 0 0.0140179943045896 81 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 5 225469 225549 Hesseltinella vesiculosa 101127 AAG|GTATATTCTC...ATTGTTTTATTA/CATTGTTTTATT...GGAAG|GCA 2 1 18.161
92354645 GT-AG 0 1.000000099473604e-05 86 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 6 225726 225811 Hesseltinella vesiculosa 101127 GAG|GTACGTGCCA...TCATCTTTGTCG/GCGAAACTCATC...GTCAG|GCT 1 1 26.132
92354646 GT-AG 0 1.000000099473604e-05 75 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 7 226099 226173 Hesseltinella vesiculosa 101127 AAG|GTAATGTCAT...TTTTTTTTAAAA/TTTTTTTTAAAA...AATAG|GGA 0 1 39.13
92354647 GT-AG 0 0.0005184693563522 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 8 226262 226325 Hesseltinella vesiculosa 101127 ATG|GTATTGTCCA...TTTTTCTTCTTC/TATTGACTCACT...TATAG|TCT 1 1 43.116
92354648 GT-AG 0 1.0078211803836564e-05 74 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 9 226355 226428 Hesseltinella vesiculosa 101127 AAT|GTAAGTTGGA...TCTCCTCTATTT/CTCAAACTTACA...TATAG|GCT 0 1 44.429
92354649 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 10 226585 226640 Hesseltinella vesiculosa 101127 GAG|GTAATGGACA...GCTCCATTCATT/GCTCCATTCATT...TTTAG|GCC 0 1 51.495
92354650 GT-AG 0 1.000000099473604e-05 70 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 12 227404 227473 Hesseltinella vesiculosa 101127 GAA|GTAAAACAAT...TTTTCTTTCGTC/CGGTCTCTCACT...GACAG|AGC 0 1 84.918
92354651 GT-AG 0 0.00123051338288 57 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA257039 17285747 13 227639 227695 Hesseltinella vesiculosa 101127 GTG|GTATGTCTTT...TCCTATTTGATC/TTATTGTTCACA...TTTAG|TAC 0 1 92.391

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.53ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)