home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 17285744

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354617 GT-AG 0 0.0001176659833749 118 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 1 377298 377415 Hesseltinella vesiculosa 101127 AAG|GTAACGTGCA...TTTGTCTTCTCT/GCTCATCTCATG...TCTAG|TGG 1 1 12.935
92354618 GT-AG 0 0.0001621264537086 52 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 2 377677 377728 Hesseltinella vesiculosa 101127 AGG|GTACAATCCA...CTCGCTTTATCT/CCTCGCTTTATC...TTTAG|AGC 1 1 24.74
92354619 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 3 377848 377907 Hesseltinella vesiculosa 101127 CAG|GTAAATGAAT...AAGTCTCTGATG/ACACTGCTCATT...ACTAG|AAA 0 1 30.122
92354620 GT-AG 0 0.0151032875375222 48 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 4 378140 378187 Hesseltinella vesiculosa 101127 ATG|GTAACCATTT...TTTTTTTTCGTG/GCGACACTCACT...TGTAG|ACT 1 1 40.615
92354621 GT-AG 0 1.000000099473604e-05 49 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 5 378335 378383 Hesseltinella vesiculosa 101127 CAG|GTACTGAAGA...TGACTTTTTTCT/CTCAGGCTGACT...CCCAG|GTT 1 1 47.264
92354622 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 6 378555 378605 Hesseltinella vesiculosa 101127 AGG|GTGAGTGAGA...ACTTTCTTGACG/ACTTTCTTGACG...GTTAG|CTC 1 1 54.998
92354623 GT-AG 0 1.000000099473604e-05 62 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 7 378794 378855 Hesseltinella vesiculosa 101127 CAG|GTAAGACGGA...GACCTCTTTTTG/GCGATACTGACC...TTCAG|GCA 0 1 63.501
92354624 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 8 378909 378967 Hesseltinella vesiculosa 101127 CAG|GTACTGGCAG...CACTTTTTTCCT/TGAGTGCTCACT...GATAG|ACA 2 1 65.898
92354625 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 9 379093 379148 Hesseltinella vesiculosa 101127 CGG|GTAAGAAAAA...ATAGCCTTGACT/CCTTGACTCATC...GACAG|GCT 1 1 71.551
92354626 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 10 379283 379340 Hesseltinella vesiculosa 101127 ACG|GTATGGAAAG...TTTTTTTTTTTT/ACGCCTCTCACA...TGCAG|CTC 0 1 77.612
92354627 GT-AG 0 0.0068384925510072 119 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 11 379590 379708 Hesseltinella vesiculosa 101127 CCA|GTAAGTTTCT...GGGTTCTTGACG/GGGTTCTTGACG...GTCAG|TTA 0 1 88.874
92354628 GT-AG 0 1.000000099473604e-05 87 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 12 379808 379894 Hesseltinella vesiculosa 101127 CAG|GTAAAAAAAA...TCACCCTTACCC/CTTGGACTCACC...ATCAG|CGA 0 1 93.351
92354629 GT-AG 0 1.000000099473604e-05 75 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 13 379967 380041 Hesseltinella vesiculosa 101127 AAT|GTACTGGCAA...ATGATTTTATTT/CTTAGTTTGACT...TTTAG|CAT 0 1 96.608
92354630 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 14 380097 380154 Hesseltinella vesiculosa 101127 GAG|GTAAGAAAAA...AATCCTTTACCT/TAATCCTTTACC...AATAG|AAC 1 1 99.095

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.336ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)