introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 17285744
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354617 | GT-AG | 0 | 0.0001176659833749 | 118 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 1 | 377298 | 377415 | Hesseltinella vesiculosa 101127 | AAG|GTAACGTGCA...TTTGTCTTCTCT/GCTCATCTCATG...TCTAG|TGG | 1 | 1 | 12.935 |
92354618 | GT-AG | 0 | 0.0001621264537086 | 52 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 2 | 377677 | 377728 | Hesseltinella vesiculosa 101127 | AGG|GTACAATCCA...CTCGCTTTATCT/CCTCGCTTTATC...TTTAG|AGC | 1 | 1 | 24.74 |
92354619 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 3 | 377848 | 377907 | Hesseltinella vesiculosa 101127 | CAG|GTAAATGAAT...AAGTCTCTGATG/ACACTGCTCATT...ACTAG|AAA | 0 | 1 | 30.122 |
92354620 | GT-AG | 0 | 0.0151032875375222 | 48 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 4 | 378140 | 378187 | Hesseltinella vesiculosa 101127 | ATG|GTAACCATTT...TTTTTTTTCGTG/GCGACACTCACT...TGTAG|ACT | 1 | 1 | 40.615 |
92354621 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 5 | 378335 | 378383 | Hesseltinella vesiculosa 101127 | CAG|GTACTGAAGA...TGACTTTTTTCT/CTCAGGCTGACT...CCCAG|GTT | 1 | 1 | 47.264 |
92354622 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 6 | 378555 | 378605 | Hesseltinella vesiculosa 101127 | AGG|GTGAGTGAGA...ACTTTCTTGACG/ACTTTCTTGACG...GTTAG|CTC | 1 | 1 | 54.998 |
92354623 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 7 | 378794 | 378855 | Hesseltinella vesiculosa 101127 | CAG|GTAAGACGGA...GACCTCTTTTTG/GCGATACTGACC...TTCAG|GCA | 0 | 1 | 63.501 |
92354624 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 8 | 378909 | 378967 | Hesseltinella vesiculosa 101127 | CAG|GTACTGGCAG...CACTTTTTTCCT/TGAGTGCTCACT...GATAG|ACA | 2 | 1 | 65.898 |
92354625 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 9 | 379093 | 379148 | Hesseltinella vesiculosa 101127 | CGG|GTAAGAAAAA...ATAGCCTTGACT/CCTTGACTCATC...GACAG|GCT | 1 | 1 | 71.551 |
92354626 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 10 | 379283 | 379340 | Hesseltinella vesiculosa 101127 | ACG|GTATGGAAAG...TTTTTTTTTTTT/ACGCCTCTCACA...TGCAG|CTC | 0 | 1 | 77.612 |
92354627 | GT-AG | 0 | 0.0068384925510072 | 119 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 11 | 379590 | 379708 | Hesseltinella vesiculosa 101127 | CCA|GTAAGTTTCT...GGGTTCTTGACG/GGGTTCTTGACG...GTCAG|TTA | 0 | 1 | 88.874 |
92354628 | GT-AG | 0 | 1.000000099473604e-05 | 87 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 12 | 379808 | 379894 | Hesseltinella vesiculosa 101127 | CAG|GTAAAAAAAA...TCACCCTTACCC/CTTGGACTCACC...ATCAG|CGA | 0 | 1 | 93.351 |
92354629 | GT-AG | 0 | 1.000000099473604e-05 | 75 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 13 | 379967 | 380041 | Hesseltinella vesiculosa 101127 | AAT|GTACTGGCAA...ATGATTTTATTT/CTTAGTTTGACT...TTTAG|CAT | 0 | 1 | 96.608 |
92354630 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330781 17285744 | 14 | 380097 | 380154 | Hesseltinella vesiculosa 101127 | GAG|GTAAGAAAAA...AATCCTTTACCT/TAATCCTTTACC...AATAG|AAC | 1 | 1 | 99.095 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);