introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 17285742
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354609 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314289 17285742 | 1 | 551495 | 551549 | Hesseltinella vesiculosa 101127 | AAG|GTAAAGGACA...TGTTTATTGATC/CTTTTGTTTATT...AAAAG|ATG | 1 | 1 | 2.458 |
92354610 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314289 17285742 | 2 | 551648 | 551705 | Hesseltinella vesiculosa 101127 | CTT|GTAAGTGGAA...CTTTTCTTGCAA/GCTAATCTCATT...TTCAG|CAA | 0 | 1 | 6.836 |
92354611 | GT-AG | 0 | 6.806991404407345e-05 | 52 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314289 17285742 | 3 | 551766 | 551817 | Hesseltinella vesiculosa 101127 | CTG|GTACGTTCAC...TTGTCTTTTGCA/TGCCTACTCACT...TTTAG|TTT | 0 | 1 | 9.517 |
92354612 | GT-AG | 0 | 0.0048542848929555 | 62 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314289 17285742 | 4 | 552051 | 552112 | Hesseltinella vesiculosa 101127 | CTA|GTACGTCTGT...GTTTTCTTGAAC/GTTTTCTTGAAC...AACAG|CGA | 2 | 1 | 19.929 |
92354613 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314289 17285742 | 5 | 552432 | 552485 | Hesseltinella vesiculosa 101127 | TTG|GTAGTTGCTC...ATCCCCTCATTT/CATCCCCTCATT...TTTAG|GCC | 0 | 1 | 34.182 |
92354614 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314289 17285742 | 6 | 553057 | 553108 | Hesseltinella vesiculosa 101127 | TTG|GTAAGCGACA...ATCTCCTTCCCA/CCAAACCTCATT...AAAAG|AGG | 1 | 1 | 59.696 |
92354615 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314289 17285742 | 7 | 553500 | 553559 | Hesseltinella vesiculosa 101127 | TCG|GTAAGCGGCC...TTGACCTTTTTT/CGAACATTGACC...TCTAG|CCA | 2 | 1 | 77.167 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);