introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
7 rows where transcript_id = 17285739
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354596 | GT-AG | 0 | 0.0007377761629785 | 85 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330706 17285739 | 1 | 157737 | 157821 | Hesseltinella vesiculosa 101127 | CAA|GTAAGCCCTT...AAACCCTTGACC/AAACCCTTGACC...TTTAG|TTG | 1 | 1 | 6.088 |
92354597 | GT-AG | 0 | 0.7543827009952737 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330706 17285739 | 2 | 157402 | 157465 | Hesseltinella vesiculosa 101127 | CAA|GTATGCTTGT...TTTTTTTTATAT/TTTTTTTTTATA...AACAG|TGA | 2 | 1 | 17.959 |
92354598 | GT-AG | 0 | 0.0002539652205762 | 85 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330706 17285739 | 3 | 157103 | 157187 | Hesseltinella vesiculosa 101127 | ATG|GTACTATCCT...TTTTTTTTATTT/TTTTTTTTTATT...AATAG|AGA | 0 | 1 | 27.332 |
92354599 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330706 17285739 | 4 | 156926 | 156979 | Hesseltinella vesiculosa 101127 | CTG|GTAAGATGTC...TGAGTCTGACAC/ATGAGTCTGACA...TGTAG|CTT | 0 | 1 | 32.72 |
92354600 | GT-AG | 0 | 2.5888367978992285e-05 | 62 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330706 17285739 | 5 | 156639 | 156700 | Hesseltinella vesiculosa 101127 | AAG|GTAGCACCAA...GATACCATAAAT/CAAAGACTCACT...AACAG|TCG | 0 | 1 | 42.576 |
92354601 | GT-AG | 0 | 3.995699910998638e-05 | 73 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330706 17285739 | 6 | 156428 | 156500 | Hesseltinella vesiculosa 101127 | GCT|GTAAGTGGGT...TTTTTTTTAAAA/CTTTTCCTGACT...AAAAG|GAA | 0 | 1 | 48.62 |
92354602 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330706 17285739 | 7 | 155491 | 155562 | Hesseltinella vesiculosa 101127 | CTG|GTAAAATAAT...TAATCCGTGATA/GTGATATTGACG...TCTAG|GAC | 1 | 1 | 86.509 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);