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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 17285730

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Suggested facets: score, length, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354537 GT-AG 0 0.0003102074376532 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 1 1539252 1539307 Hesseltinella vesiculosa 101127 CGA|GTAAGTTTGG...TTTTTTTTTTTT/GAAGGACTGACG...AACAG|AGA 2 1 8.931
92354538 GT-AG 0 0.0003932472561708 47 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 2 1539137 1539183 Hesseltinella vesiculosa 101127 CTG|GTAAGCTTTG...TTATTTTTATAG/TTTATTTTTATA...TTTAG|GTG 1 1 11.537
92354539 GT-AG 0 7.021944186362917e-05 52 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 3 1538957 1539008 Hesseltinella vesiculosa 101127 CCC|GTAGGTGTTT...ACTGACTTGAAT/CAGAAACTGACT...TGTAG|TCT 0 1 16.443
92354540 GT-AG 0 1.000000099473604e-05 63 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 4 1538786 1538848 Hesseltinella vesiculosa 101127 GAG|GTAACGATAA...ACGGCTTTTTTT/TGACAACTCATC...TCCAG|TCG 0 1 20.583
92354541 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 5 1538624 1538673 Hesseltinella vesiculosa 101127 AAG|GTAAGAAGTC...TGAGTATTCACC/TGAGTATTCACC...TTCAG|AGG 1 1 24.875
92354542 GT-AG 0 0.0011165273899586 66 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 6 1537935 1538000 Hesseltinella vesiculosa 101127 AAG|GTAACCCCCC...TATTTTATGATT/CGTGTGTTTATT...TGTAG|GAT 0 1 48.754
92354543 GT-AG 0 1.000000099473604e-05 50 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 7 1537225 1537274 Hesseltinella vesiculosa 101127 GAA|GTAAGTGTCT...CAGTGCTCATTT/CCAGTGCTCATT...ACTAG|GTG 0 1 74.051
92354544 GT-AG 0 1.000000099473604e-05 65 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 8 1536902 1536966 Hesseltinella vesiculosa 101127 CAG|GTATGGAGAG...CAGAACTTACCC/GCAGAACTTACC...TTTAG|ATG 0 1 83.94
92356617 GT-AG 0 0.0005128535523585 69 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 9 1536598 1536666 Hesseltinella vesiculosa 101127 CCG|GTAAGCTTCG...ATTTCCTTTTTT/GTATGCCTCATC...CCTAG|GTT   0 92.947

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.214ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)