introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 17285730
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Suggested facets: score, length, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354537 | GT-AG | 0 | 0.0003102074376532 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 | 1 | 1539252 | 1539307 | Hesseltinella vesiculosa 101127 | CGA|GTAAGTTTGG...TTTTTTTTTTTT/GAAGGACTGACG...AACAG|AGA | 2 | 1 | 8.931 |
92354538 | GT-AG | 0 | 0.0003932472561708 | 47 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 | 2 | 1539137 | 1539183 | Hesseltinella vesiculosa 101127 | CTG|GTAAGCTTTG...TTATTTTTATAG/TTTATTTTTATA...TTTAG|GTG | 1 | 1 | 11.537 |
92354539 | GT-AG | 0 | 7.021944186362917e-05 | 52 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 | 3 | 1538957 | 1539008 | Hesseltinella vesiculosa 101127 | CCC|GTAGGTGTTT...ACTGACTTGAAT/CAGAAACTGACT...TGTAG|TCT | 0 | 1 | 16.443 |
92354540 | GT-AG | 0 | 1.000000099473604e-05 | 63 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 | 4 | 1538786 | 1538848 | Hesseltinella vesiculosa 101127 | GAG|GTAACGATAA...ACGGCTTTTTTT/TGACAACTCATC...TCCAG|TCG | 0 | 1 | 20.583 |
92354541 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 | 5 | 1538624 | 1538673 | Hesseltinella vesiculosa 101127 | AAG|GTAAGAAGTC...TGAGTATTCACC/TGAGTATTCACC...TTCAG|AGG | 1 | 1 | 24.875 |
92354542 | GT-AG | 0 | 0.0011165273899586 | 66 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 | 6 | 1537935 | 1538000 | Hesseltinella vesiculosa 101127 | AAG|GTAACCCCCC...TATTTTATGATT/CGTGTGTTTATT...TGTAG|GAT | 0 | 1 | 48.754 |
92354543 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 | 7 | 1537225 | 1537274 | Hesseltinella vesiculosa 101127 | GAA|GTAAGTGTCT...CAGTGCTCATTT/CCAGTGCTCATT...ACTAG|GTG | 0 | 1 | 74.051 |
92354544 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 | 8 | 1536902 | 1536966 | Hesseltinella vesiculosa 101127 | CAG|GTATGGAGAG...CAGAACTTACCC/GCAGAACTTACC...TTTAG|ATG | 0 | 1 | 83.94 |
92356617 | GT-AG | 0 | 0.0005128535523585 | 69 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1012114 17285730 | 9 | 1536598 | 1536666 | Hesseltinella vesiculosa 101127 | CCG|GTAAGCTTCG...ATTTCCTTTTTT/GTATGCCTCATC...CCTAG|GTT | 0 | 92.947 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);