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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

9 rows where transcript_id = 17285729

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Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354528 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 1 1192640 1192707 Hesseltinella vesiculosa 101127 CCA|GTAAGTCTAT...TGAGCCCTGTCG/CTGTCGCTCACT...ATTAG|ACC 2 1 5.604
92354529 GT-AG 0 0.000554974988809 53 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 2 1192358 1192410 Hesseltinella vesiculosa 101127 TCT|GTAAGATTGC...CTCACCTTGACC/TGCCATCTCACC...TTTAG|AGC 0 1 15.182
92354530 GT-AG 0 0.0018292007765157 52 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 3 1192061 1192112 Hesseltinella vesiculosa 101127 TGA|GTAAGTCTTC...TCTTCCTTGACA/TCTTCCTTGACA...CATAG|GCA 2 1 25.429
92354531 GT-AG 0 1.000000099473604e-05 73 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 4 1191519 1191591 Hesseltinella vesiculosa 101127 AAG|GTAAAAAAAA...AAGTGCTCATCC/CTCTCTCTCATA...TATAG|ATG 0 1 45.044
92354532 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 5 1191373 1191430 Hesseltinella vesiculosa 101127 CAG|GTAACACGTC...GATACCTTTCTC/CAAGGTTTGATA...GTTAG|GCC 1 1 48.724
92354533 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 6 1191238 1191292 Hesseltinella vesiculosa 101127 AAG|GTAGAAGACA...AACGTCGTGACA/AACGTCGTGACA...CTTAG|ATG 0 1 52.07
92354534 GT-AG 0 1.9310033415128672e-05 58 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 7 1190880 1190937 Hesseltinella vesiculosa 101127 GGT|GTAAGTGTCA...CTCCCCTTGTAT/GAGAAACTCACT...AACAG|CGT 0 1 64.617
92354535 GC-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 8 1190459 1190516 Hesseltinella vesiculosa 101127 AAG|GCAAGTTGAA...TTTTTTTTTGCA/TAGCGACTTATT...CGCAG|GAT 0 1 79.799
92354536 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 9 1190272 1190323 Hesseltinella vesiculosa 101127 AGG|GTAAGCCGTG...CATTTTTTTGCA/ACAAGGCTCATT...GGCAG|GAA 0 1 85.445

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 31.166ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)