introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 17285729
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354528 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 | 1 | 1192640 | 1192707 | Hesseltinella vesiculosa 101127 | CCA|GTAAGTCTAT...TGAGCCCTGTCG/CTGTCGCTCACT...ATTAG|ACC | 2 | 1 | 5.604 |
92354529 | GT-AG | 0 | 0.000554974988809 | 53 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 | 2 | 1192358 | 1192410 | Hesseltinella vesiculosa 101127 | TCT|GTAAGATTGC...CTCACCTTGACC/TGCCATCTCACC...TTTAG|AGC | 0 | 1 | 15.182 |
92354530 | GT-AG | 0 | 0.0018292007765157 | 52 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 | 3 | 1192061 | 1192112 | Hesseltinella vesiculosa 101127 | TGA|GTAAGTCTTC...TCTTCCTTGACA/TCTTCCTTGACA...CATAG|GCA | 2 | 1 | 25.429 |
92354531 | GT-AG | 0 | 1.000000099473604e-05 | 73 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 | 4 | 1191519 | 1191591 | Hesseltinella vesiculosa 101127 | AAG|GTAAAAAAAA...AAGTGCTCATCC/CTCTCTCTCATA...TATAG|ATG | 0 | 1 | 45.044 |
92354532 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 | 5 | 1191373 | 1191430 | Hesseltinella vesiculosa 101127 | CAG|GTAACACGTC...GATACCTTTCTC/CAAGGTTTGATA...GTTAG|GCC | 1 | 1 | 48.724 |
92354533 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 | 6 | 1191238 | 1191292 | Hesseltinella vesiculosa 101127 | AAG|GTAGAAGACA...AACGTCGTGACA/AACGTCGTGACA...CTTAG|ATG | 0 | 1 | 52.07 |
92354534 | GT-AG | 0 | 1.9310033415128672e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 | 7 | 1190880 | 1190937 | Hesseltinella vesiculosa 101127 | GGT|GTAAGTGTCA...CTCCCCTTGTAT/GAGAAACTCACT...AACAG|CGT | 0 | 1 | 64.617 |
92354535 | GC-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 | 8 | 1190459 | 1190516 | Hesseltinella vesiculosa 101127 | AAG|GCAAGTTGAA...TTTTTTTTTGCA/TAGCGACTTATT...CGCAG|GAT | 0 | 1 | 79.799 |
92354536 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379552 17285729 | 9 | 1190272 | 1190323 | Hesseltinella vesiculosa 101127 | AGG|GTAAGCCGTG...CATTTTTTTGCA/ACAAGGCTCATT...GGCAG|GAA | 0 | 1 | 85.445 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);