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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 17285725

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354511 GT-AG 0 1.000000099473604e-05 105 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 1 984071 984175 Hesseltinella vesiculosa 101127 GAG|GTTAGTCAAT...TCTTCTTTATTT/TCTTTATTTACC...GCCAG|ACA 0 1 3.704
92354512 GT-AG 0 1.000000099473604e-05 89 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 2 984361 984449 Hesseltinella vesiculosa 101127 AAG|GTAAAAAAAA...GGCTCCGTGCTG/TCAGAGCTAAGA...GATAG|ATC 2 1 11.317
92354513 GT-AG 0 1.000000099473604e-05 76 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 3 984898 984973 Hesseltinella vesiculosa 101127 CTG|GTAAAAAAAA...TTATTTTTAATT/TTATTTTTAATT...CGTAG|CAT 0 1 29.753
92354514 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 4 985263 985322 Hesseltinella vesiculosa 101127 CTG|GTAAAAAAAA...TTTTGTTTGATT/TTTTGTTTGATT...ACTAG|ATA 1 1 41.646
92354515 GT-AG 0 1.000000099473604e-05 62 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 5 985399 985460 Hesseltinella vesiculosa 101127 CAA|GTAAGGGCTT...TTTATTTTATTT/TTTTATTTTATT...ATTAG|AAA 2 1 44.774
92354516 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 6 986030 986080 Hesseltinella vesiculosa 101127 AGG|GTAAAGGAAA...ACCCCCTTCTTT/CGAAAATTCACC...CATAG|TCT 1 1 68.189
92354517 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 7 986165 986211 Hesseltinella vesiculosa 101127 TCG|GTAAAAATGA...CAGTGCTGACCA/CCAGTGCTGACC...TACAG|GGG 1 1 71.646
92354518 GT-AG 0 5.271027056527785e-05 62 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 8 986323 986384 Hesseltinella vesiculosa 101127 AAG|GTACGTATCA...TGACTTTTATTT/CTGACTTTTATT...TACAG|AGG 1 1 76.214
92354519 GT-AG 0 1.000000099473604e-05 70 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 9 986531 986600 Hesseltinella vesiculosa 101127 TTG|GTAAGCGCCA...TTCTCGTTCGCC/GTTTGGCTCACT...GATAG|ATC 0 1 82.222
92354520 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 10 986704 986762 Hesseltinella vesiculosa 101127 ATG|GTAAATTGAT...CGTCGCTTGGCT/GCTTGGCTAAAG...TGCAG|GTC 1 1 86.461

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 28.215ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)