introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 17285725
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354511 | GT-AG | 0 | 1.000000099473604e-05 | 105 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 | 1 | 984071 | 984175 | Hesseltinella vesiculosa 101127 | GAG|GTTAGTCAAT...TCTTCTTTATTT/TCTTTATTTACC...GCCAG|ACA | 0 | 1 | 3.704 |
92354512 | GT-AG | 0 | 1.000000099473604e-05 | 89 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 | 2 | 984361 | 984449 | Hesseltinella vesiculosa 101127 | AAG|GTAAAAAAAA...GGCTCCGTGCTG/TCAGAGCTAAGA...GATAG|ATC | 2 | 1 | 11.317 |
92354513 | GT-AG | 0 | 1.000000099473604e-05 | 76 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 | 3 | 984898 | 984973 | Hesseltinella vesiculosa 101127 | CTG|GTAAAAAAAA...TTATTTTTAATT/TTATTTTTAATT...CGTAG|CAT | 0 | 1 | 29.753 |
92354514 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 | 4 | 985263 | 985322 | Hesseltinella vesiculosa 101127 | CTG|GTAAAAAAAA...TTTTGTTTGATT/TTTTGTTTGATT...ACTAG|ATA | 1 | 1 | 41.646 |
92354515 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 | 5 | 985399 | 985460 | Hesseltinella vesiculosa 101127 | CAA|GTAAGGGCTT...TTTATTTTATTT/TTTTATTTTATT...ATTAG|AAA | 2 | 1 | 44.774 |
92354516 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 | 6 | 986030 | 986080 | Hesseltinella vesiculosa 101127 | AGG|GTAAAGGAAA...ACCCCCTTCTTT/CGAAAATTCACC...CATAG|TCT | 1 | 1 | 68.189 |
92354517 | GT-AG | 0 | 1.000000099473604e-05 | 47 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 | 7 | 986165 | 986211 | Hesseltinella vesiculosa 101127 | TCG|GTAAAAATGA...CAGTGCTGACCA/CCAGTGCTGACC...TACAG|GGG | 1 | 1 | 71.646 |
92354518 | GT-AG | 0 | 5.271027056527785e-05 | 62 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 | 8 | 986323 | 986384 | Hesseltinella vesiculosa 101127 | AAG|GTACGTATCA...TGACTTTTATTT/CTGACTTTTATT...TACAG|AGG | 1 | 1 | 76.214 |
92354519 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 | 9 | 986531 | 986600 | Hesseltinella vesiculosa 101127 | TTG|GTAAGCGCCA...TTCTCGTTCGCC/GTTTGGCTCACT...GATAG|ATC | 0 | 1 | 82.222 |
92354520 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330999 17285725 | 10 | 986704 | 986762 | Hesseltinella vesiculosa 101127 | ATG|GTAAATTGAT...CGTCGCTTGGCT/GCTTGGCTAAAG...TGCAG|GTC | 1 | 1 | 86.461 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);