introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 17285724
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Suggested facets: length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354502 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379422 17285724 | 1 | 738834 | 738905 | Hesseltinella vesiculosa 101127 | AAG|GTAAGCCCTA...TTTTTTTTGGTT/TTTTTGGTTATC...GGTAG|CTC | 1 | 1 | 8.954 |
92354503 | GT-AG | 0 | 1.000000099473604e-05 | 47 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379422 17285724 | 2 | 738653 | 738699 | Hesseltinella vesiculosa 101127 | GAG|GTAATGATCA...ACGACGCTGACC/ACGACGCTGACC...ATTAG|CAA | 0 | 1 | 14.408 |
92354504 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379422 17285724 | 3 | 738355 | 738403 | Hesseltinella vesiculosa 101127 | CAG|GTAAAAGAGA...ATCCACTTGGCT/ACTTGGCTGACT...CATAG|AAC | 0 | 1 | 24.542 |
92354505 | GT-AG | 0 | 1.000000099473604e-05 | 103 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379422 17285724 | 4 | 738057 | 738159 | Hesseltinella vesiculosa 101127 | AAG|GTAAAAAAAA...TTATTTTTTATT/TTATTTTTTATT...TTTAG|GTT | 0 | 1 | 32.479 |
92354506 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379422 17285724 | 5 | 737612 | 737660 | Hesseltinella vesiculosa 101127 | TTG|GTAAGGGGCA...ACCCTCTTTTTT/CATCTACTCACC...TGAAG|ATT | 0 | 1 | 48.596 |
92354507 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379422 17285724 | 6 | 737169 | 737220 | Hesseltinella vesiculosa 101127 | AAG|GTAAAAGAAA...GGGGACTGGACC/GGGGACTGGACC...TTAAG|ACT | 1 | 1 | 64.51 |
92354508 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379422 17285724 | 7 | 736480 | 736540 | Hesseltinella vesiculosa 101127 | AAG|GTAAAATAAC...TTTTTTTTAATT/TTTTTTTTAATT...GTTAG|ACA | 2 | 1 | 90.069 |
92354509 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379422 17285724 | 8 | 736295 | 736352 | Hesseltinella vesiculosa 101127 | AAG|GTAGTACAAA...CCAACCTTTTTC/GGCAAGGTCACC...TGTAG|CAA | 0 | 1 | 95.238 |
92354510 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379422 17285724 | 9 | 736138 | 736196 | Hesseltinella vesiculosa 101127 | CAA|GTAAGTCCAA...AGATGCTGATCT/AAGATGCTGATC...GGTAG|GGG | 2 | 1 | 99.227 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);