introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 17285723
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354490 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 | 1 | 1485522 | 1485577 | Hesseltinella vesiculosa 101127 | CAA|GTAAGTCTCG...AGTAGCTTACAC/AAGTAGCTTACA...CATAG|ACG | 1 | 1 | 1.38 |
92354491 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 | 2 | 1485317 | 1485380 | Hesseltinella vesiculosa 101127 | ACG|GTAAAGACAT...TCATTTTTGTTC/GTGCGACTCATT...TCTAG|AGC | 1 | 1 | 7.105 |
92354492 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 | 3 | 1485128 | 1485183 | Hesseltinella vesiculosa 101127 | AGG|GTAAGCCACC...AGAATCTCAACC/AAGAATCTCAAC...TTCAG|CTA | 2 | 1 | 12.505 |
92354493 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 | 4 | 1484875 | 1484943 | Hesseltinella vesiculosa 101127 | AAG|GTAGAGAAAG...TCTTTTTTATTC/TTCTTTTTTATT...AATAG|GAA | 0 | 1 | 19.976 |
92354494 | GT-AG | 0 | 1.000000099473604e-05 | 66 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 | 5 | 1484478 | 1484543 | Hesseltinella vesiculosa 101127 | TTG|GTAGGGGGTT...TCCGCCTGACTA/TTCCGCCTGACT...TGTAG|ATG | 1 | 1 | 33.415 |
92354495 | GT-AG | 0 | 1.5669738686199287e-05 | 54 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 | 6 | 1484338 | 1484391 | Hesseltinella vesiculosa 101127 | TCG|GTACGTCAAA...GAAACCTCAACG/CCAGGACTCACC...TTTAG|ATT | 0 | 1 | 36.906 |
92354496 | GT-AG | 0 | 0.019108063904984 | 69 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 | 7 | 1483855 | 1483923 | Hesseltinella vesiculosa 101127 | AAG|GTAACTTTTT...GAATCTCTGACC/TTGCTGCTGATT...TGCAG|AAA | 0 | 1 | 53.715 |
92354497 | GT-AG | 0 | 0.0041413103182644 | 53 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 | 8 | 1483660 | 1483712 | Hesseltinella vesiculosa 101127 | ATT|GTAAGCATGT...TATGCTTTGATT/TTGTTACTTACA...CACAG|ACC | 1 | 1 | 59.48 |
92354498 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 | 9 | 1483463 | 1483529 | Hesseltinella vesiculosa 101127 | GAA|GTAAGTGACA...ATCCTTTCAACA/GCCATACTCATC...CACAG|ATG | 2 | 1 | 64.758 |
92354499 | GT-AG | 0 | 9.358156631854644e-05 | 74 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 | 10 | 1483283 | 1483356 | Hesseltinella vesiculosa 101127 | TCA|GTAAGTCTCC...TTTTTTTTTTCT/ATTTGGCTCACT...AAAAG|AAA | 0 | 1 | 69.062 |
92354500 | GT-AG | 0 | 1.191326013211563e-05 | 75 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 | 11 | 1482997 | 1483071 | Hesseltinella vesiculosa 101127 | GCT|GTAAGATGCC...TTTTTTTTTTCT/CAAAAATTCATT...ATTAG|CAC | 1 | 1 | 77.629 |
92354501 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 | 12 | 1482741 | 1482811 | Hesseltinella vesiculosa 101127 | CAG|GTAAGAAGCG...TTTTTTTTCACA/TTTTTTTTCACA...TATAG|ACA | 0 | 1 | 85.14 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);