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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 17285723

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354490 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 1 1485522 1485577 Hesseltinella vesiculosa 101127 CAA|GTAAGTCTCG...AGTAGCTTACAC/AAGTAGCTTACA...CATAG|ACG 1 1 1.38
92354491 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 2 1485317 1485380 Hesseltinella vesiculosa 101127 ACG|GTAAAGACAT...TCATTTTTGTTC/GTGCGACTCATT...TCTAG|AGC 1 1 7.105
92354492 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 3 1485128 1485183 Hesseltinella vesiculosa 101127 AGG|GTAAGCCACC...AGAATCTCAACC/AAGAATCTCAAC...TTCAG|CTA 2 1 12.505
92354493 GT-AG 0 1.000000099473604e-05 69 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 4 1484875 1484943 Hesseltinella vesiculosa 101127 AAG|GTAGAGAAAG...TCTTTTTTATTC/TTCTTTTTTATT...AATAG|GAA 0 1 19.976
92354494 GT-AG 0 1.000000099473604e-05 66 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 5 1484478 1484543 Hesseltinella vesiculosa 101127 TTG|GTAGGGGGTT...TCCGCCTGACTA/TTCCGCCTGACT...TGTAG|ATG 1 1 33.415
92354495 GT-AG 0 1.5669738686199287e-05 54 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 6 1484338 1484391 Hesseltinella vesiculosa 101127 TCG|GTACGTCAAA...GAAACCTCAACG/CCAGGACTCACC...TTTAG|ATT 0 1 36.906
92354496 GT-AG 0 0.019108063904984 69 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 7 1483855 1483923 Hesseltinella vesiculosa 101127 AAG|GTAACTTTTT...GAATCTCTGACC/TTGCTGCTGATT...TGCAG|AAA 0 1 53.715
92354497 GT-AG 0 0.0041413103182644 53 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 8 1483660 1483712 Hesseltinella vesiculosa 101127 ATT|GTAAGCATGT...TATGCTTTGATT/TTGTTACTTACA...CACAG|ACC 1 1 59.48
92354498 GT-AG 0 1.000000099473604e-05 67 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 9 1483463 1483529 Hesseltinella vesiculosa 101127 GAA|GTAAGTGACA...ATCCTTTCAACA/GCCATACTCATC...CACAG|ATG 2 1 64.758
92354499 GT-AG 0 9.358156631854644e-05 74 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 10 1483283 1483356 Hesseltinella vesiculosa 101127 TCA|GTAAGTCTCC...TTTTTTTTTTCT/ATTTGGCTCACT...AAAAG|AAA 0 1 69.062
92354500 GT-AG 0 1.191326013211563e-05 75 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 11 1482997 1483071 Hesseltinella vesiculosa 101127 GCT|GTAAGATGCC...TTTTTTTTTTCT/CAAAAATTCATT...ATTAG|CAC 1 1 77.629
92354501 GT-AG 0 1.000000099473604e-05 71 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA208046 17285723 12 1482741 1482811 Hesseltinella vesiculosa 101127 CAG|GTAAGAAGCG...TTTTTTTTCACA/TTTTTTTTCACA...TATAG|ACA 0 1 85.14

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 24.983ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)