introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
6 rows where transcript_id = 17285714
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354451 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379361 17285714 | 1 | 567610 | 567669 | Hesseltinella vesiculosa 101127 | AGA|GTAAAAGAAG...TTTTTTTTTATG/TTTTTTTTTATG...CCTAG|CGA | 0 | 1 | 1.814 |
92354452 | GT-AG | 0 | 1.000000099473604e-05 | 99 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379361 17285714 | 2 | 567463 | 567561 | Hesseltinella vesiculosa 101127 | AAT|GTAAGAACGT...CAAGGATTAACT/CAAGGATTAACT...ATTAG|GAT | 0 | 1 | 3.628 |
92354453 | GT-AG | 0 | 0.1039128409087628 | 66 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379361 17285714 | 3 | 566034 | 566099 | Hesseltinella vesiculosa 101127 | CAG|GTATTCTTAA...GGACCCATGACT/TTTTTGCTGATC...ACCAG|AGG | 1 | 1 | 55.14 |
92354454 | GT-AG | 0 | 0.0011823175109979 | 51 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379361 17285714 | 4 | 565786 | 565836 | Hesseltinella vesiculosa 101127 | AAG|GTATGCGCGG...ACTTTTTTATTA/CACTTTTTTATT...TTCAG|ATG | 0 | 1 | 62.585 |
92354455 | GT-AG | 0 | 1.000000099473604e-05 | 79 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379361 17285714 | 5 | 565626 | 565704 | Hesseltinella vesiculosa 101127 | CAG|GTGAAATGAA...TTTTTTTTATTG/CTTTTTTTTATT...CAAAG|GCA | 0 | 1 | 65.646 |
92354456 | GT-AG | 0 | 1.000000099473604e-05 | 101 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1379361 17285714 | 6 | 565057 | 565157 | Hesseltinella vesiculosa 101127 | AAG|GTAATACAAG...TTTTTTTTAAAC/CTTTTTCTAAAC...CACAG|GTT | 0 | 1 | 83.333 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);