introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
10 rows where transcript_id = 17285713
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354441 | GT-AG | 0 | 2.3835660198180543e-05 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 | 1 | 1689024 | 1689079 | Hesseltinella vesiculosa 101127 | CAG|GTAAACATTG...TATCCTATAAAC/CGCATTCTAAAG...CATAG|AAC | 0 | 1 | 2.37 |
92354442 | GT-AG | 0 | 1.000000099473604e-05 | 63 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 | 2 | 1689113 | 1689175 | Hesseltinella vesiculosa 101127 | GGC|GTAAGTGGAC...TTCTTCGTGACA/AATAGGCTCATT...GCTAG|TTT | 0 | 1 | 3.612 |
92354443 | GT-AG | 0 | 1.000000099473604e-05 | 93 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 | 3 | 1689287 | 1689379 | Hesseltinella vesiculosa 101127 | AAG|GTAAAAAAAA...TTTTTTTTTTTT/CCATACTTCATC...CTCAG|CTT | 0 | 1 | 7.788 |
92354444 | GT-AG | 0 | 2.501189291775724e-05 | 49 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 | 4 | 1689636 | 1689684 | Hesseltinella vesiculosa 101127 | CCT|GTAAGTTACC...TCAGCATTGTCT/AGCGAACTCAGC...TTTAG|TGA | 1 | 1 | 17.419 |
92354445 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 | 5 | 1690440 | 1690506 | Hesseltinella vesiculosa 101127 | CAG|GTAAAACATA...TTTTTTTTTTTT/GCTGGGCTCAAT...TATAG|GCC | 0 | 1 | 45.824 |
92354446 | GT-AG | 0 | 1.000000099473604e-05 | 91 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 | 6 | 1690600 | 1690690 | Hesseltinella vesiculosa 101127 | CAG|GTAATTAAAA...CAAACCTTGTCA/TTGTTTCTAAAA...TGCAG|CGC | 0 | 1 | 49.323 |
92354447 | GT-AG | 0 | 1.3522062022242568e-05 | 62 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 | 7 | 1690782 | 1690843 | Hesseltinella vesiculosa 101127 | TTG|GTAGGTCACT...TCCTTTTTGATC/TCCTTTTTGATC...CGAAG|CTC | 1 | 1 | 52.746 |
92354448 | GT-AG | 0 | 0.0002465532179928 | 65 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 | 8 | 1691008 | 1691072 | Hesseltinella vesiculosa 101127 | AAC|GTAGGTCTAA...TTGACTTTGACA/TATTATTTGACT...TCAAG|TCG | 0 | 1 | 58.916 |
92354449 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 | 9 | 1691317 | 1691380 | Hesseltinella vesiculosa 101127 | CAG|GTTAGTCTTC...ACCGTTTTCACT/ACCGTTTTCACT...CAAAG|ACA | 1 | 1 | 68.096 |
92354450 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 | 10 | 1691614 | 1691681 | Hesseltinella vesiculosa 101127 | TGG|GTAAGTGCGC...CGAGCCTGATTG/CCGAGCCTGATT...TGTAG|GTG | 0 | 1 | 76.862 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);