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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 17285713

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354441 GT-AG 0 2.3835660198180543e-05 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 1 1689024 1689079 Hesseltinella vesiculosa 101127 CAG|GTAAACATTG...TATCCTATAAAC/CGCATTCTAAAG...CATAG|AAC 0 1 2.37
92354442 GT-AG 0 1.000000099473604e-05 63 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 2 1689113 1689175 Hesseltinella vesiculosa 101127 GGC|GTAAGTGGAC...TTCTTCGTGACA/AATAGGCTCATT...GCTAG|TTT 0 1 3.612
92354443 GT-AG 0 1.000000099473604e-05 93 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 3 1689287 1689379 Hesseltinella vesiculosa 101127 AAG|GTAAAAAAAA...TTTTTTTTTTTT/CCATACTTCATC...CTCAG|CTT 0 1 7.788
92354444 GT-AG 0 2.501189291775724e-05 49 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 4 1689636 1689684 Hesseltinella vesiculosa 101127 CCT|GTAAGTTACC...TCAGCATTGTCT/AGCGAACTCAGC...TTTAG|TGA 1 1 17.419
92354445 GT-AG 0 1.000000099473604e-05 67 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 5 1690440 1690506 Hesseltinella vesiculosa 101127 CAG|GTAAAACATA...TTTTTTTTTTTT/GCTGGGCTCAAT...TATAG|GCC 0 1 45.824
92354446 GT-AG 0 1.000000099473604e-05 91 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 6 1690600 1690690 Hesseltinella vesiculosa 101127 CAG|GTAATTAAAA...CAAACCTTGTCA/TTGTTTCTAAAA...TGCAG|CGC 0 1 49.323
92354447 GT-AG 0 1.3522062022242568e-05 62 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 7 1690782 1690843 Hesseltinella vesiculosa 101127 TTG|GTAGGTCACT...TCCTTTTTGATC/TCCTTTTTGATC...CGAAG|CTC 1 1 52.746
92354448 GT-AG 0 0.0002465532179928 65 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 8 1691008 1691072 Hesseltinella vesiculosa 101127 AAC|GTAGGTCTAA...TTGACTTTGACA/TATTATTTGACT...TCAAG|TCG 0 1 58.916
92354449 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 9 1691317 1691380 Hesseltinella vesiculosa 101127 CAG|GTTAGTCTTC...ACCGTTTTCACT/ACCGTTTTCACT...CAAAG|ACA 1 1 68.096
92354450 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331256 17285713 10 1691614 1691681 Hesseltinella vesiculosa 101127 TGG|GTAAGTGCGC...CGAGCCTGATTG/CCGAGCCTGATT...TGTAG|GTG 0 1 76.862

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 87.701ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)