home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

14 rows where transcript_id = 17285710

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354422 GT-AG 0 1.000000099473604e-05 87 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 1 1137094 1137180 Hesseltinella vesiculosa 101127 TTG|GTAAGTGATT...CTTTCTTCAATA/ACATTGCTTATT...CGTAG|ACA 1 1 1.232
92354423 GT-AG 0 1.000000099473604e-05 81 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 2 1136963 1137043 Hesseltinella vesiculosa 101127 CCA|GTAAGATCAT...TTTTTTTTACTG/TTTTTTTTTACT...TCTAG|TTG 0 1 3.043
92354424 GT-AG 0 0.113660864728158 69 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 3 1136501 1136569 Hesseltinella vesiculosa 101127 AAG|GTAACCCTTA...GACGTCTTGACG/CCCTTCTTTATT...ATTAG|ACC 0 1 17.283
92354425 GT-AG 0 1.000000099473604e-05 67 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 4 1136347 1136413 Hesseltinella vesiculosa 101127 GAG|GTAAACACAG...CTTTCCTCATCT/GCTTTCCTCATC...GGTAG|GCG 0 1 20.435
92354426 GT-AG 0 0.0006391214861191 63 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 5 1136079 1136141 Hesseltinella vesiculosa 101127 TGC|GTAAGTTGCA...TATTCTTTATTG/ATATTCTTTATT...GCTAG|CCG 1 1 27.862
92354427 GT-AG 0 1.000000099473604e-05 48 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 6 1135600 1135647 Hesseltinella vesiculosa 101127 CAG|GTATAGAATC...CGCGCAGTAACA/AGAAGACCCACT...TTTAG|GAT 0 1 43.478
92354428 GT-AG 0 1.0310511042193578e-05 61 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 7 1135413 1135473 Hesseltinella vesiculosa 101127 GAG|GTAGGCTGAT...TTCATCTCACCC/CTTCATCTCACC...TGTAG|GAA 0 1 48.043
92354429 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 8 1135237 1135297 Hesseltinella vesiculosa 101127 AAG|GTGCAAAAGC...CTTTCTCTATTC/TGCGTACTCATC...AACAG|AGC 1 1 52.21
92354430 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 9 1135125 1135180 Hesseltinella vesiculosa 101127 CGG|GTAAAGATCA...GCTTGCTAAAAT/AGCTTGCTAAAA...GACAG|GTC 0 1 54.239
92354431 GT-AG 0 1.000000099473604e-05 70 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 10 1134793 1134862 Hesseltinella vesiculosa 101127 TTG|GTAAGAGTGC...TTTCTCGTAAAC/TTGGAGCTCACC...GACAG|CTT 1 1 63.732
92354432 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 11 1134514 1134570 Hesseltinella vesiculosa 101127 GAG|GTAAAATGCG...ATCTGCTTATTT/CATCTGCTTATT...CGCAG|ATG 1 1 71.775
92354433 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 12 1134381 1134448 Hesseltinella vesiculosa 101127 CAG|GTAGGGGGAT...TTTTTTTTAAAT/TTTTTTTTAAAT...CTTAG|ATT 0 1 74.13
92354434 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 13 1134053 1134120 Hesseltinella vesiculosa 101127 GGA|GTAAGATCAT...GTTGGGTTAGCA/AATGAACTAATC...CTTAG|ATT 2 1 83.551
92354435 GT-AG 0 2.4918938915700845e-05 58 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 14 1133723 1133780 Hesseltinella vesiculosa 101127 AAG|GTAAACCATG...ACCGCGTTGACT/ACCGCGTTGACT...CTTAG|ATC 1 1 93.406

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.458ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)