introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
14 rows where transcript_id = 17285710
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354422 | GT-AG | 0 | 1.000000099473604e-05 | 87 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 1 | 1137094 | 1137180 | Hesseltinella vesiculosa 101127 | TTG|GTAAGTGATT...CTTTCTTCAATA/ACATTGCTTATT...CGTAG|ACA | 1 | 1 | 1.232 |
92354423 | GT-AG | 0 | 1.000000099473604e-05 | 81 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 2 | 1136963 | 1137043 | Hesseltinella vesiculosa 101127 | CCA|GTAAGATCAT...TTTTTTTTACTG/TTTTTTTTTACT...TCTAG|TTG | 0 | 1 | 3.043 |
92354424 | GT-AG | 0 | 0.113660864728158 | 69 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 3 | 1136501 | 1136569 | Hesseltinella vesiculosa 101127 | AAG|GTAACCCTTA...GACGTCTTGACG/CCCTTCTTTATT...ATTAG|ACC | 0 | 1 | 17.283 |
92354425 | GT-AG | 0 | 1.000000099473604e-05 | 67 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 4 | 1136347 | 1136413 | Hesseltinella vesiculosa 101127 | GAG|GTAAACACAG...CTTTCCTCATCT/GCTTTCCTCATC...GGTAG|GCG | 0 | 1 | 20.435 |
92354426 | GT-AG | 0 | 0.0006391214861191 | 63 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 5 | 1136079 | 1136141 | Hesseltinella vesiculosa 101127 | TGC|GTAAGTTGCA...TATTCTTTATTG/ATATTCTTTATT...GCTAG|CCG | 1 | 1 | 27.862 |
92354427 | GT-AG | 0 | 1.000000099473604e-05 | 48 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 6 | 1135600 | 1135647 | Hesseltinella vesiculosa 101127 | CAG|GTATAGAATC...CGCGCAGTAACA/AGAAGACCCACT...TTTAG|GAT | 0 | 1 | 43.478 |
92354428 | GT-AG | 0 | 1.0310511042193578e-05 | 61 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 7 | 1135413 | 1135473 | Hesseltinella vesiculosa 101127 | GAG|GTAGGCTGAT...TTCATCTCACCC/CTTCATCTCACC...TGTAG|GAA | 0 | 1 | 48.043 |
92354429 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 8 | 1135237 | 1135297 | Hesseltinella vesiculosa 101127 | AAG|GTGCAAAAGC...CTTTCTCTATTC/TGCGTACTCATC...AACAG|AGC | 1 | 1 | 52.21 |
92354430 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 9 | 1135125 | 1135180 | Hesseltinella vesiculosa 101127 | CGG|GTAAAGATCA...GCTTGCTAAAAT/AGCTTGCTAAAA...GACAG|GTC | 0 | 1 | 54.239 |
92354431 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 10 | 1134793 | 1134862 | Hesseltinella vesiculosa 101127 | TTG|GTAAGAGTGC...TTTCTCGTAAAC/TTGGAGCTCACC...GACAG|CTT | 1 | 1 | 63.732 |
92354432 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 11 | 1134514 | 1134570 | Hesseltinella vesiculosa 101127 | GAG|GTAAAATGCG...ATCTGCTTATTT/CATCTGCTTATT...CGCAG|ATG | 1 | 1 | 71.775 |
92354433 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 12 | 1134381 | 1134448 | Hesseltinella vesiculosa 101127 | CAG|GTAGGGGGAT...TTTTTTTTAAAT/TTTTTTTTAAAT...CTTAG|ATT | 0 | 1 | 74.13 |
92354434 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 13 | 1134053 | 1134120 | Hesseltinella vesiculosa 101127 | GGA|GTAAGATCAT...GTTGGGTTAGCA/AATGAACTAATC...CTTAG|ATT | 2 | 1 | 83.551 |
92354435 | GT-AG | 0 | 2.4918938915700845e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331055 17285710 | 14 | 1133723 | 1133780 | Hesseltinella vesiculosa 101127 | AAG|GTAAACCATG...ACCGCGTTGACT/ACCGCGTTGACT...CTTAG|ATC | 1 | 1 | 93.406 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);