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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

10 rows where transcript_id = 17285705

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Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354382 GT-AG 0 1.000000099473604e-05 69 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330669 17285705 1 59380 59448 Hesseltinella vesiculosa 101127 GTG|GTAAGATGCA...CTTACTTTGTCA/TACTTTGTCATT...TTCAG|GTC 0 1 8.781
92354383 GT-AG 0 4.566200397807151e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330669 17285705 2 59591 59658 Hesseltinella vesiculosa 101127 ATG|GTAAGCAGCC...TGTCTCTTGATT/TGCCTTTTTACT...CATAG|GAA 1 1 13.671
92354384 GT-AG 0 0.0003615522625021 71 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330669 17285705 3 60078 60148 Hesseltinella vesiculosa 101127 TTT|GTAAGCACGC...TTTTTTTTACCC/TTTTTTTTTACC...ACTAG|GAA 0 1 28.099
92354385 GT-AG 0 1.000000099473604e-05 69 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330669 17285705 4 60815 60883 Hesseltinella vesiculosa 101127 CAG|GTAGGAGAAA...CTTTCCTTTTTT/CGGCTGCTAAAC...AATAG|GCC 0 1 51.033
92354386 GT-AG 0 0.0001843389043173 59 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330669 17285705 5 60977 61035 Hesseltinella vesiculosa 101127 AAA|GTAAGCTAGG...TATTTTATGACA/TATTATTTTATG...CTTAG|ACG 0 1 54.236
92354387 GT-AG 0 0.0007605304872159 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330669 17285705 6 61408 61471 Hesseltinella vesiculosa 101127 CCG|GTATGTACTG...GTTCTCTCGACG/ATCCATCTCATC...TATAG|CCA 0 1 67.045
92354388 GT-AG 0 1.5845861069538156e-05 57 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330669 17285705 7 61661 61717 Hesseltinella vesiculosa 101127 AAA|GTAATTTCAA...CTTTTTTTTTTT/TCCCCTCTCACT...GATAG|GCC 0 1 73.554
92354389 GT-AG 0 1.000000099473604e-05 77 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330669 17285705 8 61914 61990 Hesseltinella vesiculosa 101127 CAA|GTAAGACTTC...TTTTTTTTCACT/TTTTTTTTCACT...CTCAG|TGT 1 1 80.303
92354390 GC-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330669 17285705 9 62128 62186 Hesseltinella vesiculosa 101127 CAG|GCAAGTCGTG...TAACTCTTTGTG/GTACAATTAACT...AATAG|ATG 0 1 85.021
92354391 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330669 17285705 10 62287 62337 Hesseltinella vesiculosa 101127 AAG|GTAAAACCGC...TATCTCTTTTTT/TCTTTTTTTAAT...ATTAG|ACT 1 1 88.464

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 37.416ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)