introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
15 rows where transcript_id = 17285688
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Suggested facets: dinucleotide_pair, score, length, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354296 | GC-AG | 0 | 1.000000099473604e-05 | 84 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 2 | 431416 | 431499 | Hesseltinella vesiculosa 101127 | AAT|GCAAGTGCCC...TCGGTTTTGTCT/GTCATGCTGACG...TGTAG|GGA | 1 | 1 | 6.806 |
92354297 | GT-AG | 0 | 1.000000099473604e-05 | 83 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 3 | 431642 | 431724 | Hesseltinella vesiculosa 101127 | CTG|GTAAGAGCTT...GGTGCCTTACCA/CATGCTTTTACT...CACAG|GAA | 2 | 1 | 10.918 |
92354298 | GT-AG | 0 | 1.000000099473604e-05 | 85 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 4 | 431889 | 431973 | Hesseltinella vesiculosa 101127 | ATT|GTAAGTGAGC...TTCTTCTTTTTT/CTCATTCTCATT...TTAAG|CTG | 1 | 1 | 15.668 |
92354299 | GT-AG | 0 | 0.0010087104129983 | 63 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 5 | 432140 | 432202 | Hesseltinella vesiculosa 101127 | AAA|GTAAGCGTTG...TTTTTTTTAAAA/TTTTTTTTTAAA...AAAAG|CTA | 2 | 1 | 20.475 |
92354300 | GT-AG | 0 | 0.0001355166483071 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 6 | 432528 | 432591 | Hesseltinella vesiculosa 101127 | AAG|GTATATACTC...GAGACCTCACTC/AGAGACCTCACT...CCTAG|GGT | 0 | 1 | 29.887 |
92354301 | GT-AG | 0 | 1.000000099473604e-05 | 74 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 7 | 432701 | 432774 | Hesseltinella vesiculosa 101127 | ACG|GTAATAAGCA...GGAGCCTCATCG/TGGAGCCTCATC...TGTAG|ATA | 1 | 1 | 33.044 |
92354302 | GT-AG | 0 | 3.51407217576978e-05 | 75 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 8 | 432990 | 433064 | Hesseltinella vesiculosa 101127 | AAG|GTAAACCATC...CCCTTTTTATTT/ACCCTTTTTATT...CATAG|ATC | 0 | 1 | 39.27 |
92354303 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 9 | 433163 | 433218 | Hesseltinella vesiculosa 101127 | CGG|GTAAGCAACA...ATCTCATTGCCT/ACGGATCTCATT...CTTAG|TGT | 2 | 1 | 42.108 |
92354304 | GT-AG | 0 | 1.4392027276226146e-05 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 10 | 433512 | 433575 | Hesseltinella vesiculosa 101127 | TCG|GTAAACGACA...CGTTTCTAGACC/CTATGCCTGACT...TCTAG|TTC | 1 | 1 | 50.594 |
92354305 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 11 | 433659 | 433726 | Hesseltinella vesiculosa 101127 | ATG|GTAAAAAAAA...TGGTTCTCATTT/CTGGTTCTCATT...TTCAG|ATT | 0 | 1 | 52.997 |
92354306 | GT-AG | 0 | 0.00063480868633 | 55 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 12 | 433956 | 434010 | Hesseltinella vesiculosa 101127 | GCC|GTAAGCAGAG...TTGTCTTTATTT/ATTGTCTTTATT...TGTAG|AAT | 1 | 1 | 59.629 |
92354307 | GT-AG | 0 | 4.858638196510052e-05 | 69 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 13 | 434189 | 434257 | Hesseltinella vesiculosa 101127 | CCA|GTAAGCCACC...TTTTTCTTTCTG/TTCTTTCTGATG...TGTAG|TGG | 2 | 1 | 64.784 |
92354308 | GT-AG | 0 | 1.000000099473604e-05 | 47 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 14 | 434477 | 434523 | Hesseltinella vesiculosa 101127 | AGA|GTAAGTGCGA...CGTTCCACGACT/CCACGACTCATT...TTTAG|AGC | 2 | 1 | 71.127 |
92354309 | GT-AG | 0 | 1.3124177413098688e-05 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 15 | 435396 | 435451 | Hesseltinella vesiculosa 101127 | AAG|GTAACGATAA...ACCGTTTTATAT/AGTATGCTCACC...CATAG|ACG | 1 | 1 | 96.38 |
92356614 | GT-AG | 0 | 4.2129871854560026e-05 | 67 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 | 1 | 431234 | 431300 | Hesseltinella vesiculosa 101127 | GAC|GTAAGTTGTC...TTTTTTTTGCTC/TGGTGTTTTATG...TTTAG|GAA | 0 | 3.823 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);