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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

15 rows where transcript_id = 17285688

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Suggested facets: dinucleotide_pair, score, length, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354296 GC-AG 0 1.000000099473604e-05 84 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 2 431416 431499 Hesseltinella vesiculosa 101127 AAT|GCAAGTGCCC...TCGGTTTTGTCT/GTCATGCTGACG...TGTAG|GGA 1 1 6.806
92354297 GT-AG 0 1.000000099473604e-05 83 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 3 431642 431724 Hesseltinella vesiculosa 101127 CTG|GTAAGAGCTT...GGTGCCTTACCA/CATGCTTTTACT...CACAG|GAA 2 1 10.918
92354298 GT-AG 0 1.000000099473604e-05 85 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 4 431889 431973 Hesseltinella vesiculosa 101127 ATT|GTAAGTGAGC...TTCTTCTTTTTT/CTCATTCTCATT...TTAAG|CTG 1 1 15.668
92354299 GT-AG 0 0.0010087104129983 63 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 5 432140 432202 Hesseltinella vesiculosa 101127 AAA|GTAAGCGTTG...TTTTTTTTAAAA/TTTTTTTTTAAA...AAAAG|CTA 2 1 20.475
92354300 GT-AG 0 0.0001355166483071 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 6 432528 432591 Hesseltinella vesiculosa 101127 AAG|GTATATACTC...GAGACCTCACTC/AGAGACCTCACT...CCTAG|GGT 0 1 29.887
92354301 GT-AG 0 1.000000099473604e-05 74 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 7 432701 432774 Hesseltinella vesiculosa 101127 ACG|GTAATAAGCA...GGAGCCTCATCG/TGGAGCCTCATC...TGTAG|ATA 1 1 33.044
92354302 GT-AG 0 3.51407217576978e-05 75 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 8 432990 433064 Hesseltinella vesiculosa 101127 AAG|GTAAACCATC...CCCTTTTTATTT/ACCCTTTTTATT...CATAG|ATC 0 1 39.27
92354303 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 9 433163 433218 Hesseltinella vesiculosa 101127 CGG|GTAAGCAACA...ATCTCATTGCCT/ACGGATCTCATT...CTTAG|TGT 2 1 42.108
92354304 GT-AG 0 1.4392027276226146e-05 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 10 433512 433575 Hesseltinella vesiculosa 101127 TCG|GTAAACGACA...CGTTTCTAGACC/CTATGCCTGACT...TCTAG|TTC 1 1 50.594
92354305 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 11 433659 433726 Hesseltinella vesiculosa 101127 ATG|GTAAAAAAAA...TGGTTCTCATTT/CTGGTTCTCATT...TTCAG|ATT 0 1 52.997
92354306 GT-AG 0 0.00063480868633 55 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 12 433956 434010 Hesseltinella vesiculosa 101127 GCC|GTAAGCAGAG...TTGTCTTTATTT/ATTGTCTTTATT...TGTAG|AAT 1 1 59.629
92354307 GT-AG 0 4.858638196510052e-05 69 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 13 434189 434257 Hesseltinella vesiculosa 101127 CCA|GTAAGCCACC...TTTTTCTTTCTG/TTCTTTCTGATG...TGTAG|TGG 2 1 64.784
92354308 GT-AG 0 1.000000099473604e-05 47 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 14 434477 434523 Hesseltinella vesiculosa 101127 AGA|GTAAGTGCGA...CGTTCCACGACT/CCACGACTCATT...TTTAG|AGC 2 1 71.127
92354309 GT-AG 0 1.3124177413098688e-05 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 15 435396 435451 Hesseltinella vesiculosa 101127 AAG|GTAACGATAA...ACCGTTTTATAT/AGTATGCTCACC...CATAG|ACG 1 1 96.38
92356614 GT-AG 0 4.2129871854560026e-05 67 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330803 17285688 1 431234 431300 Hesseltinella vesiculosa 101127 GAC|GTAAGTTGTC...TTTTTTTTGCTC/TGGTGTTTTATG...TTTAG|GAA   0 3.823

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 27.031ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)