home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

12 rows where transcript_id = 17285687

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354284 GT-AG 0 1.000000099473604e-05 65 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 1 283256 283320 Hesseltinella vesiculosa 101127 AAA|GTAGGAAAGA...TTTTTCTTCTTT/TCGGTTCTTACG...TTCAG|GTT 0 1 0.449
92354285 GT-AG 0 1.000000099473604e-05 65 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 2 283441 283505 Hesseltinella vesiculosa 101127 TTG|GTAAATGTTT...TTCTTCTTTTTG/TTTGTTCTCACA...TATAG|GCT 0 1 4.043
92354286 GT-AG 0 1.000000099473604e-05 71 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 3 283543 283613 Hesseltinella vesiculosa 101127 GCA|GTAATGAAGT...CGTCTTTTGATT/CGTCTTTTGATT...CATAG|GTA 1 1 5.151
92354287 GC-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 4 283712 283767 Hesseltinella vesiculosa 101127 GAG|GCAAGTCTCA...CTTTCTTTTTCT/CGCAGGCTTACC...TGTAG|TTT 0 1 8.086
92354288 GT-AG 0 1.000000099473604e-05 82 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 5 284038 284119 Hesseltinella vesiculosa 101127 CAT|GTAAAAAAAA...TCTTTTTTTATG/TCTTTTTTTATG...GCTAG|TTT 0 1 16.173
92354289 GT-AG 0 5.45461367616589e-05 165 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 6 284483 284647 Hesseltinella vesiculosa 101127 CCC|GTAAGTCTTG...TTTTCTTTTGTC/CATTTACTCATT...CATAG|GAC 0 1 27.044
92354290 GT-AG 0 0.008697696631358 70 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 7 284931 285000 Hesseltinella vesiculosa 101127 CCG|GTAACCAAAA...CTTTTCTTGTTT/GACGCACTAACC...TTTAG|ACA 1 1 35.52
92354291 GT-AG 0 1.000000099473604e-05 76 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 8 285309 285384 Hesseltinella vesiculosa 101127 AAG|GTAAATTCAC...AATCACTTGACC/TTTTTTCTCACC...ACCAG|AAC 0 1 44.744
92354292 GT-AG 0 1.652230176989562e-05 53 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 9 285611 285663 Hesseltinella vesiculosa 101127 ACT|GTAAGGACCG...ACCGCCTTGATC/AAAAAACTGACC...CCTAG|TGA 1 1 51.512
92354293 GT-AG 0 1.000000099473604e-05 76 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 10 286689 286764 Hesseltinella vesiculosa 101127 AAG|GTAAAAAAAA...CTTTCCTTGCCC/TATCTTCTCATT...ACTAG|AGC 0 1 82.21
92354294 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 11 287089 287146 Hesseltinella vesiculosa 101127 CAG|GTAATAAAAA...CAACCGTTCGCA/AAGATGCTCACC...TTTAG|CAT 0 1 91.914
92354295 GT-AG 0 1.0068225367922613e-05 60 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 12 287219 287278 Hesseltinella vesiculosa 101127 ACT|GTAAGGGTTT...TGCCCTTTACCA/TTTTTTCCTATC...GACAG|AAG 0 1 94.07

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 96.909ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)