introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
12 rows where transcript_id = 17285687
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354284 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 | 1 | 283256 | 283320 | Hesseltinella vesiculosa 101127 | AAA|GTAGGAAAGA...TTTTTCTTCTTT/TCGGTTCTTACG...TTCAG|GTT | 0 | 1 | 0.449 |
92354285 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 | 2 | 283441 | 283505 | Hesseltinella vesiculosa 101127 | TTG|GTAAATGTTT...TTCTTCTTTTTG/TTTGTTCTCACA...TATAG|GCT | 0 | 1 | 4.043 |
92354286 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 | 3 | 283543 | 283613 | Hesseltinella vesiculosa 101127 | GCA|GTAATGAAGT...CGTCTTTTGATT/CGTCTTTTGATT...CATAG|GTA | 1 | 1 | 5.151 |
92354287 | GC-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 | 4 | 283712 | 283767 | Hesseltinella vesiculosa 101127 | GAG|GCAAGTCTCA...CTTTCTTTTTCT/CGCAGGCTTACC...TGTAG|TTT | 0 | 1 | 8.086 |
92354288 | GT-AG | 0 | 1.000000099473604e-05 | 82 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 | 5 | 284038 | 284119 | Hesseltinella vesiculosa 101127 | CAT|GTAAAAAAAA...TCTTTTTTTATG/TCTTTTTTTATG...GCTAG|TTT | 0 | 1 | 16.173 |
92354289 | GT-AG | 0 | 5.45461367616589e-05 | 165 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 | 6 | 284483 | 284647 | Hesseltinella vesiculosa 101127 | CCC|GTAAGTCTTG...TTTTCTTTTGTC/CATTTACTCATT...CATAG|GAC | 0 | 1 | 27.044 |
92354290 | GT-AG | 0 | 0.008697696631358 | 70 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 | 7 | 284931 | 285000 | Hesseltinella vesiculosa 101127 | CCG|GTAACCAAAA...CTTTTCTTGTTT/GACGCACTAACC...TTTAG|ACA | 1 | 1 | 35.52 |
92354291 | GT-AG | 0 | 1.000000099473604e-05 | 76 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 | 8 | 285309 | 285384 | Hesseltinella vesiculosa 101127 | AAG|GTAAATTCAC...AATCACTTGACC/TTTTTTCTCACC...ACCAG|AAC | 0 | 1 | 44.744 |
92354292 | GT-AG | 0 | 1.652230176989562e-05 | 53 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 | 9 | 285611 | 285663 | Hesseltinella vesiculosa 101127 | ACT|GTAAGGACCG...ACCGCCTTGATC/AAAAAACTGACC...CCTAG|TGA | 1 | 1 | 51.512 |
92354293 | GT-AG | 0 | 1.000000099473604e-05 | 76 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 | 10 | 286689 | 286764 | Hesseltinella vesiculosa 101127 | AAG|GTAAAAAAAA...CTTTCCTTGCCC/TATCTTCTCATT...ACTAG|AGC | 0 | 1 | 82.21 |
92354294 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 | 11 | 287089 | 287146 | Hesseltinella vesiculosa 101127 | CAG|GTAATAAAAA...CAACCGTTCGCA/AAGATGCTCACC...TTTAG|CAT | 0 | 1 | 91.914 |
92354295 | GT-AG | 0 | 1.0068225367922613e-05 | 60 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1330746 17285687 | 12 | 287219 | 287278 | Hesseltinella vesiculosa 101127 | ACT|GTAAGGGTTT...TGCCCTTTACCA/TTTTTTCCTATC...GACAG|AAG | 0 | 1 | 94.07 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);