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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

23 rows where transcript_id = 17285680

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354219 GT-AG 0 1.000000099473604e-05 107 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 1 933862 933968 Hesseltinella vesiculosa 101127 CAG|GTAAGACAAT...TAGATTTTAACT/TTTTAACTCATA...TGTAG|ATC 0 1 0.239
92354220 GT-AG 0 3.766825387192781e-05 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 2 933716 933779 Hesseltinella vesiculosa 101127 TTG|GTAAAGTTTA...TTCTTTTTAATC/TTCTTTTTAATC...TGCAG|GAG 1 1 2.413
92354221 GT-AG 0 1.000000099473604e-05 71 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 3 933575 933645 Hesseltinella vesiculosa 101127 TTG|GTAATGCATT...AAAGCCTTATTC/ATAATATTAATT...ATTAG|GGT 2 1 4.269
92354222 GT-AG 0 0.0005468219615363 60 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 4 933430 933489 Hesseltinella vesiculosa 101127 GAA|GTAAGCCTGT...ATGACTTTATTT/AATGACTTTATT...CATAG|CTG 0 1 6.523
92354223 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 5 933018 933081 Hesseltinella vesiculosa 101127 AAG|GTAAACAAAA...CCTTTCTTCTTC/TCTTCCATCACA...TCCAG|GGC 0 1 15.752
92354224 GT-AG 0 1.000000099473604e-05 71 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 6 932864 932934 Hesseltinella vesiculosa 101127 AAA|GTAAGCGCAG...ATGATTTTATTT/ATTTTATTTATA...CATAG|TGG 2 1 17.953
92354225 GT-AG 0 1.000000099473604e-05 73 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 7 932730 932802 Hesseltinella vesiculosa 101127 AAC|GTAAGAACCC...TATTTTTTAATG/TATTTTTTAATG...TCTAG|GAC 0 1 19.57
92354226 GT-AG 0 2.9417883912112425e-05 67 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 8 932549 932615 Hesseltinella vesiculosa 101127 ACT|GTAAGATTGT...CTCTCCTCACCA/TCTCTCCTCACC...TCTAG|ATC 0 1 22.593
92354227 GT-AG 0 1.000000099473604e-05 85 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 9 932385 932469 Hesseltinella vesiculosa 101127 CAG|GTAAGACGAT...CCTCTCATGACT/CAGCCTCTCATG...CTTAG|AAT 1 1 24.688
92354228 GT-AG 0 1.000000099473604e-05 69 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 10 932160 932228 Hesseltinella vesiculosa 101127 ATG|GTCAGCCTCA...GATTCCTCATTT/ATTTTGTTTATT...ACTAG|CTG 1 1 28.825
92354229 GT-AG 0 3.669838919486132e-05 63 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 11 932014 932076 Hesseltinella vesiculosa 101127 AAG|GTAAATATGA...CGTTCCTTACCT/CCGTTCCTTACC...AACAG|CTT 0 1 31.026
92354230 GT-AG 0 1.000000099473604e-05 63 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 12 931810 931872 Hesseltinella vesiculosa 101127 CAT|GTAAGCGGCA...TAGTGCTCATCC/ATAGTGCTCATC...GACAG|GTA 0 1 34.765
92354231 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 13 931599 931666 Hesseltinella vesiculosa 101127 CAG|GTTAGCGACG...ACCCTCTTAGCG/TCCTTTTTTATT...GTTAG|AGA 2 1 38.557
92354232 GT-AG 0 0.0184824229680311 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 14 931282 931345 Hesseltinella vesiculosa 101127 CAG|GTATCTACAA...TAACTCTTCCCT/CTCCATCTAACA...TTTAG|TTC 0 1 45.267
92354233 GT-AG 0 1.000000099473604e-05 66 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 15 931056 931121 Hesseltinella vesiculosa 101127 CAG|GTACAGACGG...TACATCTTACTC/TTACATCTTACT...CAAAG|TGA 1 1 49.509
92354234 GT-AG 0 0.0021034136534692 83 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 16 930676 930758 Hesseltinella vesiculosa 101127 AAG|GTATTTTGTG...TTTTTTTTCATG/TTTTTTTTCATG...TCAAG|GAC 1 1 57.385
92354235 GT-AG 0 1.1422219831239048e-05 73 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 17 930433 930505 Hesseltinella vesiculosa 101127 AAA|GTAATATCTG...TTATTCTCAACG/CTTATTCTCAAC...CGTAG|GCA 0 1 61.893
92354236 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 18 930246 930297 Hesseltinella vesiculosa 101127 AAG|GTACAACAGA...TGGCATTTATTT/CTGGCATTTATT...GACAG|GGC 0 1 65.473
92354237 GT-AG 0 1.000000099473604e-05 76 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 19 929990 930065 Hesseltinella vesiculosa 101127 AAA|GTACGAGAGG...CAAATCTTACCT/ACAAATCTTACC...TTTAG|CGC 0 1 70.247
92354238 GT-AG 0 1.000000099473604e-05 67 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 20 929475 929541 Hesseltinella vesiculosa 101127 CAG|GTAAGCGTAT...TTTTTTTTTTCT/GATGCGCTTATC...AGCAG|ATG 1 1 82.127
92354239 GT-AG 0 0.0025147316446991 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 21 929237 929304 Hesseltinella vesiculosa 101127 CAT|GTATATGCTT...ACAATCTTCATT/ACAATCTTCATT...CTTAG|AAA 0 1 86.635
92354240 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 22 928977 929044 Hesseltinella vesiculosa 101127 AAG|GTAATGAATT...CCAGCCCTGACA/CCAGCCCTGACA...TGTAG|AAA 0 1 91.726
92354241 GT-AG 0 1.000000099473604e-05 65 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314518 17285680 23 928690 928754 Hesseltinella vesiculosa 101127 CGG|GTAAAAAAAA...CGTTTCCTGACT/CGTTTCCTGACT...TCTAG|GCT 0 1 97.613

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.237ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)