introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
17 rows where transcript_id = 17285679
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354202 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 1 | 847632 | 847695 | Hesseltinella vesiculosa 101127 | GTG|GTAAAAAGGA...TCGAGCTTGACA/TTCTCTCTTATC...ATTAG|CTG | 1 | 1 | 18.425 |
92354203 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 2 | 847404 | 847464 | Hesseltinella vesiculosa 101127 | CCG|GTAAGTAAAA...CTTTTTTTATCT/CCTTTTTTTATC...CGCAG|CCA | 0 | 1 | 22.839 |
92354204 | GC-AG | 0 | 3.5810254362474074e-05 | 53 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 3 | 846800 | 846852 | Hesseltinella vesiculosa 101127 | CTC|GCAAGTTGAA...TTCATTTTAATT/TTCATTTTAATT...CGTAG|ATA | 2 | 1 | 37.404 |
92354205 | GT-AG | 0 | 1.000000099473604e-05 | 75 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 4 | 846423 | 846497 | Hesseltinella vesiculosa 101127 | ATG|GTAAGCCCGA...AAGCCTCTGACA/AAGCCTCTGACA...GGCAG|AGT | 1 | 1 | 45.387 |
92354206 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 5 | 846294 | 846351 | Hesseltinella vesiculosa 101127 | TTA|GTAAGTGATG...TCTCACTTACCA/GAGTATCTCACT...GGCAG|AGT | 0 | 1 | 47.264 |
92354207 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 6 | 846229 | 846281 | Hesseltinella vesiculosa 101127 | TTG|GTAAGGCAAT...TCGAACTTGGCC/CTCGTTCGAACT...GGTAG|TAT | 0 | 1 | 47.581 |
92354208 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 7 | 845992 | 846050 | Hesseltinella vesiculosa 101127 | AGG|GTAAGTCACC...TTCTCCTTCATT/TTCTCCTTCATT...AACAG|TGC | 1 | 1 | 52.287 |
92354209 | GT-AG | 0 | 0.0011176540566746 | 81 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 8 | 845861 | 845941 | Hesseltinella vesiculosa 101127 | GAG|GTAACTTCAT...ATATTCTGACCT/AATATTCTGACC...GACAG|AAA | 0 | 1 | 53.608 |
92354210 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 9 | 845748 | 845801 | Hesseltinella vesiculosa 101127 | TGG|GTAAAAAAAG...TTACTTTTCATT/TTACTTTTCATT...CGTAG|ACG | 2 | 1 | 55.168 |
92354211 | GT-AG | 0 | 3.522070195870216e-05 | 48 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 10 | 845587 | 845634 | Hesseltinella vesiculosa 101127 | ATG|GTACAGACCA...CGATCCTTATTT/GCGATCCTTATT...TAAAG|TGA | 1 | 1 | 58.155 |
92354212 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 11 | 845231 | 845299 | Hesseltinella vesiculosa 101127 | GAG|GTAAGGAGGG...TGCATCATGACG/ATTTGCATCATG...TCCAG|TAC | 0 | 1 | 65.741 |
92354213 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 12 | 845104 | 845154 | Hesseltinella vesiculosa 101127 | TCA|GTAAGTGATC...CTGGTTTTTTCA/GACGACATAACT...TCTAG|TTA | 1 | 1 | 67.75 |
92354214 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 13 | 844986 | 845053 | Hesseltinella vesiculosa 101127 | CAG|GTAAAAAAAA...ATATCTTTTGTT/TGTAGTCTCATG...TCTAG|GCC | 0 | 1 | 69.072 |
92354215 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 14 | 844807 | 844857 | Hesseltinella vesiculosa 101127 | TCG|GTAAGAGCAA...ACATGTTTAGTC/TTCAACCTGACA...CACAG|CTC | 2 | 1 | 72.456 |
92354216 | GT-AG | 0 | 1.000000099473604e-05 | 57 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 15 | 844238 | 844294 | Hesseltinella vesiculosa 101127 | CGG|GTAAGTAAAA...TGTTTCTCTACT/TGTTTCTCTACT...TCTAG|CCA | 1 | 1 | 85.99 |
92354217 | GT-AG | 0 | 1.000000099473604e-05 | 61 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 16 | 844076 | 844136 | Hesseltinella vesiculosa 101127 | GAG|GTAAGGAGCA...CAAACCTGAACA/CCAAACCTGAAC...TGCAG|TAC | 0 | 1 | 88.66 |
92354218 | GT-AG | 0 | 1.000000099473604e-05 | 104 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 | 17 | 843761 | 843864 | Hesseltinella vesiculosa 101127 | CGG|GTAAAGAGAA...TCATTGTTGACT/CCAATTCTCATT...TATAG|TGT | 1 | 1 | 94.237 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);