home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

17 rows where transcript_id = 17285679

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354202 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 1 847632 847695 Hesseltinella vesiculosa 101127 GTG|GTAAAAAGGA...TCGAGCTTGACA/TTCTCTCTTATC...ATTAG|CTG 1 1 18.425
92354203 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 2 847404 847464 Hesseltinella vesiculosa 101127 CCG|GTAAGTAAAA...CTTTTTTTATCT/CCTTTTTTTATC...CGCAG|CCA 0 1 22.839
92354204 GC-AG 0 3.5810254362474074e-05 53 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 3 846800 846852 Hesseltinella vesiculosa 101127 CTC|GCAAGTTGAA...TTCATTTTAATT/TTCATTTTAATT...CGTAG|ATA 2 1 37.404
92354205 GT-AG 0 1.000000099473604e-05 75 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 4 846423 846497 Hesseltinella vesiculosa 101127 ATG|GTAAGCCCGA...AAGCCTCTGACA/AAGCCTCTGACA...GGCAG|AGT 1 1 45.387
92354206 GT-AG 0 1.000000099473604e-05 58 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 5 846294 846351 Hesseltinella vesiculosa 101127 TTA|GTAAGTGATG...TCTCACTTACCA/GAGTATCTCACT...GGCAG|AGT 0 1 47.264
92354207 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 6 846229 846281 Hesseltinella vesiculosa 101127 TTG|GTAAGGCAAT...TCGAACTTGGCC/CTCGTTCGAACT...GGTAG|TAT 0 1 47.581
92354208 GT-AG 0 1.000000099473604e-05 59 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 7 845992 846050 Hesseltinella vesiculosa 101127 AGG|GTAAGTCACC...TTCTCCTTCATT/TTCTCCTTCATT...AACAG|TGC 1 1 52.287
92354209 GT-AG 0 0.0011176540566746 81 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 8 845861 845941 Hesseltinella vesiculosa 101127 GAG|GTAACTTCAT...ATATTCTGACCT/AATATTCTGACC...GACAG|AAA 0 1 53.608
92354210 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 9 845748 845801 Hesseltinella vesiculosa 101127 TGG|GTAAAAAAAG...TTACTTTTCATT/TTACTTTTCATT...CGTAG|ACG 2 1 55.168
92354211 GT-AG 0 3.522070195870216e-05 48 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 10 845587 845634 Hesseltinella vesiculosa 101127 ATG|GTACAGACCA...CGATCCTTATTT/GCGATCCTTATT...TAAAG|TGA 1 1 58.155
92354212 GT-AG 0 1.000000099473604e-05 69 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 11 845231 845299 Hesseltinella vesiculosa 101127 GAG|GTAAGGAGGG...TGCATCATGACG/ATTTGCATCATG...TCCAG|TAC 0 1 65.741
92354213 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 12 845104 845154 Hesseltinella vesiculosa 101127 TCA|GTAAGTGATC...CTGGTTTTTTCA/GACGACATAACT...TCTAG|TTA 1 1 67.75
92354214 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 13 844986 845053 Hesseltinella vesiculosa 101127 CAG|GTAAAAAAAA...ATATCTTTTGTT/TGTAGTCTCATG...TCTAG|GCC 0 1 69.072
92354215 GT-AG 0 1.000000099473604e-05 51 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 14 844807 844857 Hesseltinella vesiculosa 101127 TCG|GTAAGAGCAA...ACATGTTTAGTC/TTCAACCTGACA...CACAG|CTC 2 1 72.456
92354216 GT-AG 0 1.000000099473604e-05 57 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 15 844238 844294 Hesseltinella vesiculosa 101127 CGG|GTAAGTAAAA...TGTTTCTCTACT/TGTTTCTCTACT...TCTAG|CCA 1 1 85.99
92354217 GT-AG 0 1.000000099473604e-05 61 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 16 844076 844136 Hesseltinella vesiculosa 101127 GAG|GTAAGGAGCA...CAAACCTGAACA/CCAAACCTGAAC...TGCAG|TAC 0 1 88.66
92354218 GT-AG 0 1.000000099473604e-05 104 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1297663 17285679 17 843761 843864 Hesseltinella vesiculosa 101127 CGG|GTAAAGAGAA...TCATTGTTGACT/CCAATTCTCATT...TATAG|TGT 1 1 94.237

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 85.189ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)