introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
28 rows where transcript_id = 17285669
This data as json, CSV (advanced)
Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354096 | GT-AG | 0 | 0.0009035351228205 | 49 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 1 | 1001204 | 1001252 | Hesseltinella vesiculosa 101127 | AAG|GTACCTGGAA...GACTCCTCACCC/AGACTCCTCACC...AACAG|TCT | 2 | 1 | 1.976 |
92354097 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 2 | 1001378 | 1001426 | Hesseltinella vesiculosa 101127 | AAC|GTAGGACCCA...CCTCTCTTTGCA/TGCAACCTCACC...TCCAG|GCG | 1 | 1 | 4.847 |
92354098 | GC-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 3 | 1001548 | 1001596 | Hesseltinella vesiculosa 101127 | CAG|GCAAGTACCA...TGTTTCTTACTG/GTGTTTCTTACT...CATAG|CAC | 2 | 1 | 7.627 |
92354099 | GT-AG | 0 | 1.000000099473604e-05 | 49 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 4 | 1001784 | 1001832 | Hesseltinella vesiculosa 101127 | GAA|GTAAGAGAAC...TCTGGCTTACCC/CTCTGGCTTACC...GTTAG|GAT | 0 | 1 | 11.923 |
92354100 | GT-AG | 0 | 0.0005922210633277 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 5 | 1001941 | 1001996 | Hesseltinella vesiculosa 101127 | ATG|GTAATCTTTG...GTGTCACTGACT/ACTGACTTCATT...GCCAG|AAA | 0 | 1 | 14.404 |
92354101 | GC-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 6 | 1002198 | 1002256 | Hesseltinella vesiculosa 101127 | AAA|GCAAGCCGAG...CTGACCTTCTTT/CCACCGCTGACC...TCTAG|GAC | 0 | 1 | 19.021 |
92354102 | GT-AG | 0 | 3.776585597201376e-05 | 57 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 7 | 1002328 | 1002384 | Hesseltinella vesiculosa 101127 | ATG|GTAGCACAGC...CCCTCCTTTTTC/TCCCCACTTACC...CCCAG|GCG | 2 | 1 | 20.652 |
92354103 | GT-AG | 0 | 0.000340180408094 | 69 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 8 | 1002675 | 1002743 | Hesseltinella vesiculosa 101127 | CAG|GTACACGCTA...TTTTTTTTTACG/TTTTTTTTTACG...CGTAG|ATA | 1 | 1 | 27.314 |
92354104 | GT-AG | 0 | 0.0039257600574522 | 61 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 9 | 1002770 | 1002830 | Hesseltinella vesiculosa 101127 | TCC|GTACAGTTTA...ATTGCTTTTTTT/CTGTCGCTCATC...CTTAG|ATC | 0 | 1 | 27.912 |
92354105 | GT-AG | 0 | 6.302582642309668e-05 | 97 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 10 | 1002910 | 1003006 | Hesseltinella vesiculosa 101127 | GAG|GTACTGTAGA...TTTTTTTTACTT/TTTTTTTTTACT...ATCAG|AGC | 1 | 1 | 29.727 |
92354106 | GT-AG | 0 | 0.0003346277712563 | 60 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 11 | 1003225 | 1003284 | Hesseltinella vesiculosa 101127 | GTG|GTAGGTTTTT...TTGTCCTCATCC/CTTGTCCTCATC...ACTAG|TTG | 0 | 1 | 34.735 |
92354107 | GT-AG | 0 | 0.0001468686494612 | 65 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 12 | 1003456 | 1003520 | Hesseltinella vesiculosa 101127 | CAG|GTAAGCTATC...TGTTTTTTGATC/TGTTTTTTGATC...TTTAG|TTG | 0 | 1 | 38.663 |
92354108 | GC-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 13 | 1003584 | 1003642 | Hesseltinella vesiculosa 101127 | GAT|GCAAGTGAAA...ACTGACTTGTCC/AGCCAACTGACT...TCTAG|ACC | 0 | 1 | 40.11 |
92354109 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 14 | 1003852 | 1003920 | Hesseltinella vesiculosa 101127 | AAG|GTAGAAAAAA...AGGATTGTAACT/AGGATTGTAACT...TCCAG|CGC | 2 | 1 | 44.912 |
92354110 | GT-AG | 0 | 0.0002386767854159 | 55 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 15 | 1004016 | 1004070 | Hesseltinella vesiculosa 101127 | CAG|GTACGCCTCT...GACGCCTTCTTT/GATGAGCTGACG...GGTAG|ACT | 1 | 1 | 47.094 |
92354111 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 16 | 1004215 | 1004286 | Hesseltinella vesiculosa 101127 | ACG|GTAAAAAAAA...TTAACCTTGCTT/CACACGTTAACC...TACAG|GGG | 1 | 1 | 50.402 |
92354112 | GT-AG | 0 | 0.0050554974734004 | 69 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 17 | 1004433 | 1004501 | Hesseltinella vesiculosa 101127 | CCC|GTACTCCCGA...CAACCTTTTGCT/GTTGGGCTCAAC...TTTAG|ATC | 0 | 1 | 53.756 |
92354113 | GT-AG | 0 | 0.9668188359159604 | 77 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 18 | 1004708 | 1004784 | Hesseltinella vesiculosa 101127 | AGA|GTATACATCC...TTTTTTTTAAAA/TTTTTTTTTAAA...CATAG|GGA | 2 | 1 | 58.488 |
92354114 | GT-AG | 0 | 1.1265505420873688e-05 | 70 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 19 | 1004896 | 1004965 | Hesseltinella vesiculosa 101127 | AAG|GTAACAAGTA...TCAGCTCTAATT/TCAGCTCTAATT...ACTAG|CCG | 2 | 1 | 61.038 |
92354115 | GT-AG | 0 | 1.000000099473604e-05 | 77 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 20 | 1004997 | 1005073 | Hesseltinella vesiculosa 101127 | ACC|GTAAAAGAAA...GTCATCTGAACC/CTGAACCTCACC...TTTAG|AAT | 0 | 1 | 61.751 |
92354116 | GT-AG | 0 | 1.000000099473604e-05 | 50 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 21 | 1005252 | 1005301 | Hesseltinella vesiculosa 101127 | CCG|GTAAGATAAA...CAAAACTTACCT/CCAAAACTTACC...TTTAG|CAC | 1 | 1 | 65.84 |
92354117 | GT-AG | 0 | 7.96243702702413e-05 | 79 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 22 | 1005365 | 1005443 | Hesseltinella vesiculosa 101127 | GAG|GTATGTCCGT...GGTTTTTTTTTT/GAACAGCTCACG...CCTAG|TCG | 1 | 1 | 67.287 |
92354118 | GT-AG | 0 | 1.000000099473604e-05 | 80 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 23 | 1005513 | 1005592 | Hesseltinella vesiculosa 101127 | CAG|GTTAGACTTA...TGTTTTTTATTT/TTGTTTTTTATT...AATAG|AAT | 1 | 1 | 68.872 |
92354119 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 24 | 1005945 | 1006013 | Hesseltinella vesiculosa 101127 | CCG|GTAAAAAACC...CTTTTTTTATTT/TCTTTTTTTATT...ATCAG|CGT | 2 | 1 | 76.958 |
92354120 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 25 | 1006124 | 1006194 | Hesseltinella vesiculosa 101127 | GCA|GTAAGTGCAA...TTGCTTTTTGCT/CCGTTGCTCATT...AATAG|ATG | 1 | 1 | 79.485 |
92354121 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 26 | 1006321 | 1006375 | Hesseltinella vesiculosa 101127 | ATG|GTAAGAGAGG...TCTCCATTGAGC/CTCATGCTCATC...CCTAG|GGA | 1 | 1 | 82.38 |
92354122 | GT-AG | 0 | 1.000000099473604e-05 | 78 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 27 | 1006684 | 1006761 | Hesseltinella vesiculosa 101127 | AAG|GTAATGATTT...CACTTTTTATTC/ATTCTTCTTATT...TGAAG|GCT | 0 | 1 | 89.456 |
92354123 | GT-AG | 0 | 0.1163801785284682 | 81 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1331009 17285669 | 28 | 1006986 | 1007066 | Hesseltinella vesiculosa 101127 | TAG|GTACCTTTAC...CATCCCTTTTTT/GCCGACCTCATC...TATAG|CGC | 2 | 1 | 94.601 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);