introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
6 rows where transcript_id = 17285666
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354075 | GT-AG | 0 | 1.000000099473604e-05 | 481 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1387673 17285666 | 1 | 625690 | 626170 | Hesseltinella vesiculosa 101127 | ACG|GTAAGGCCCT...CTTGCATTGTTC/GCATTGTTCACC...GATAG|ATA | 2 | 1 | 0.645 |
92354076 | GT-AG | 0 | 1.4930932688004175e-05 | 85 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1387673 17285666 | 2 | 626862 | 626946 | Hesseltinella vesiculosa 101127 | GAA|GTAAGTATCA...TTCATCTTCTCT/CAAGCTTTCATC...CACAG|TCT | 0 | 1 | 16.021 |
92354077 | GT-AG | 0 | 0.0012606063264172 | 141 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1387673 17285666 | 3 | 628024 | 628164 | Hesseltinella vesiculosa 101127 | AAA|GTCTACAACA...CATATTTTATCT/TCATATTTTATC...CAGAG|GGC | 0 | 1 | 39.987 |
92354078 | GT-AG | 0 | 0.0002744327879291 | 63 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1387673 17285666 | 4 | 628540 | 628602 | Hesseltinella vesiculosa 101127 | GCC|GTCAACCTTG...CCTGCCTCAGCA/ACCTGCCTCAGC...GCCAG|TCC | 0 | 1 | 48.331 |
92354079 | GT-AG | 0 | 8.207389401805655e-05 | 705 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1387673 17285666 | 5 | 630494 | 631198 | Hesseltinella vesiculosa 101127 | ACG|GTGTGCAACA...GTGTCCTTGCTA/GCTATCTTTACA...CAAAG|CCT | 1 | 1 | 90.409 |
92354080 | GT-AG | 0 | 1.000000099473604e-05 | 97 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1387673 17285666 | 6 | 631279 | 631375 | Hesseltinella vesiculosa 101127 | AAG|GTAAGGCATT...TTTTTTTTACAT/TTTTTTTTTACA...GGTAG|CTT | 0 | 1 | 92.19 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);