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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

15 rows where transcript_id = 17285664

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Suggested facets: dinucleotide_pair, score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354047 GT-AG 0 1.0836987793591585e-05 263 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 1 589155 589417 Hesseltinella vesiculosa 101127 CAG|GTAATTATTG...TATTTATTATTT/GTTGTATTTATT...CTTAG|CTA 0 1 0.859
92354048 GT-AG 0 1.000000099473604e-05 81 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 2 589626 589706 Hesseltinella vesiculosa 101127 AAG|GTAAATAAAC...TCACTTTTTATG/TGATGATTCACT...TTTAG|CGC 1 1 5.112
92354049 GT-AG 0 4.730850784330178e-05 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 3 590141 590196 Hesseltinella vesiculosa 101127 AAG|GTATAGATAA...TCCTTCTTTGCT/TCTTTGCTCACT...GTTAG|CTG 0 1 13.988
92354050 GT-AG 0 1.000000099473604e-05 77 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 4 590482 590558 Hesseltinella vesiculosa 101127 CAG|GTAAAAAAAA...AACGCCTTGGCA/CTTTTGTCTATC...TTTAG|GTC 0 1 19.816
92354051 GT-AG 0 0.0473270473921478 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 5 591237 591300 Hesseltinella vesiculosa 101127 AAG|GTAGCCTACT...TCATGTTTGACA/TCATGTTTGACA...AATAG|ATT 0 1 33.681
92354052 GT-AG 0 0.0028017854340741 59 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 6 591532 591590 Hesseltinella vesiculosa 101127 CGC|GTACGTTTCT...CAATCCTTTCTC/ACAAAGCTAACT...TATAG|GCT 0 1 38.405
92354053 GT-AG 0 2.408522061242356e-05 66 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 7 591844 591909 Hesseltinella vesiculosa 101127 AAG|GTAAGCCTCC...TTTTTCTTCTTC/GCCCGTTTCATT...ATCAG|GTC 1 1 43.579
92354054 GT-AG 0 1.000000099473604e-05 94 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 8 592074 592167 Hesseltinella vesiculosa 101127 AAG|GTAAGCACCG...CTTTCTTTTTTT/CTTCTGTCGACA...TACAG|GAA 0 1 46.933
92354055 CT-TT 0 0.3773013580194392 146 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 9 592500 592645 Hesseltinella vesiculosa 101127 AGT|CTATAATGCC...TTTTTTTTAATT/TTTTTTTTAATT...TAGTT|GTA 2 1 53.722
92354056 GT-AG 0 1.000000099473604e-05 71 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 10 592869 592939 Hesseltinella vesiculosa 101127 CAG|GTGAGAAAGT...CCTGTTTTGGCT/GGGAGTTTGACC...TCTAG|ATC 0 1 58.282
92354057 GT-AG 0 1.000000099473604e-05 82 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 11 593123 593204 Hesseltinella vesiculosa 101127 AAG|GTAAAAAGGA...TCTCCTTTGAAT/TTATTTTTCATT...TGTAG|GCC 0 1 62.025
92354058 GT-AG 0 1.000000099473604e-05 60 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 12 593479 593538 Hesseltinella vesiculosa 101127 TTG|GTAAAGAAAA...TCATCCTTTTTT/GTAAAACTCATC...ATCAG|ACT 1 1 67.628
92354059 GT-AG 0 1.000000099473604e-05 62 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 13 594534 594595 Hesseltinella vesiculosa 101127 GAG|GTGATTTTTC...TCACCCTTTCTC/AAGTCGCTCACC...TTTAG|GTC 0 1 87.975
92354060 GT-AG 0 1.8026086131322164e-05 58 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 14 595052 595109 Hesseltinella vesiculosa 101127 AAG|GTACTCCCCT...CGCTATTTTACT/CCATTGCTCACT...TTCAG|GTG 0 1 97.301
92354061 GT-AG 0 1.22176577349743e-05 74 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 15 595183 595256 Hesseltinella vesiculosa 101127 GTG|GTAAGTTCCG...TTTTCTTTCTTT/TTGTGCCTGACC...CTTAG|CTG 1 1 98.793

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 23.695ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)