introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
15 rows where transcript_id = 17285664
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Suggested facets: dinucleotide_pair, score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354047 | GT-AG | 0 | 1.0836987793591585e-05 | 263 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 1 | 589155 | 589417 | Hesseltinella vesiculosa 101127 | CAG|GTAATTATTG...TATTTATTATTT/GTTGTATTTATT...CTTAG|CTA | 0 | 1 | 0.859 |
92354048 | GT-AG | 0 | 1.000000099473604e-05 | 81 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 2 | 589626 | 589706 | Hesseltinella vesiculosa 101127 | AAG|GTAAATAAAC...TCACTTTTTATG/TGATGATTCACT...TTTAG|CGC | 1 | 1 | 5.112 |
92354049 | GT-AG | 0 | 4.730850784330178e-05 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 3 | 590141 | 590196 | Hesseltinella vesiculosa 101127 | AAG|GTATAGATAA...TCCTTCTTTGCT/TCTTTGCTCACT...GTTAG|CTG | 0 | 1 | 13.988 |
92354050 | GT-AG | 0 | 1.000000099473604e-05 | 77 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 4 | 590482 | 590558 | Hesseltinella vesiculosa 101127 | CAG|GTAAAAAAAA...AACGCCTTGGCA/CTTTTGTCTATC...TTTAG|GTC | 0 | 1 | 19.816 |
92354051 | GT-AG | 0 | 0.0473270473921478 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 5 | 591237 | 591300 | Hesseltinella vesiculosa 101127 | AAG|GTAGCCTACT...TCATGTTTGACA/TCATGTTTGACA...AATAG|ATT | 0 | 1 | 33.681 |
92354052 | GT-AG | 0 | 0.0028017854340741 | 59 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 6 | 591532 | 591590 | Hesseltinella vesiculosa 101127 | CGC|GTACGTTTCT...CAATCCTTTCTC/ACAAAGCTAACT...TATAG|GCT | 0 | 1 | 38.405 |
92354053 | GT-AG | 0 | 2.408522061242356e-05 | 66 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 7 | 591844 | 591909 | Hesseltinella vesiculosa 101127 | AAG|GTAAGCCTCC...TTTTTCTTCTTC/GCCCGTTTCATT...ATCAG|GTC | 1 | 1 | 43.579 |
92354054 | GT-AG | 0 | 1.000000099473604e-05 | 94 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 8 | 592074 | 592167 | Hesseltinella vesiculosa 101127 | AAG|GTAAGCACCG...CTTTCTTTTTTT/CTTCTGTCGACA...TACAG|GAA | 0 | 1 | 46.933 |
92354055 | CT-TT | 0 | 0.3773013580194392 | 146 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 9 | 592500 | 592645 | Hesseltinella vesiculosa 101127 | AGT|CTATAATGCC...TTTTTTTTAATT/TTTTTTTTAATT...TAGTT|GTA | 2 | 1 | 53.722 |
92354056 | GT-AG | 0 | 1.000000099473604e-05 | 71 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 10 | 592869 | 592939 | Hesseltinella vesiculosa 101127 | CAG|GTGAGAAAGT...CCTGTTTTGGCT/GGGAGTTTGACC...TCTAG|ATC | 0 | 1 | 58.282 |
92354057 | GT-AG | 0 | 1.000000099473604e-05 | 82 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 11 | 593123 | 593204 | Hesseltinella vesiculosa 101127 | AAG|GTAAAAAGGA...TCTCCTTTGAAT/TTATTTTTCATT...TGTAG|GCC | 0 | 1 | 62.025 |
92354058 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 12 | 593479 | 593538 | Hesseltinella vesiculosa 101127 | TTG|GTAAAGAAAA...TCATCCTTTTTT/GTAAAACTCATC...ATCAG|ACT | 1 | 1 | 67.628 |
92354059 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 13 | 594534 | 594595 | Hesseltinella vesiculosa 101127 | GAG|GTGATTTTTC...TCACCCTTTCTC/AAGTCGCTCACC...TTTAG|GTC | 0 | 1 | 87.975 |
92354060 | GT-AG | 0 | 1.8026086131322164e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 14 | 595052 | 595109 | Hesseltinella vesiculosa 101127 | AAG|GTACTCCCCT...CGCTATTTTACT/CCATTGCTCACT...TTCAG|GTG | 0 | 1 | 97.301 |
92354061 | GT-AG | 0 | 1.22176577349743e-05 | 74 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA329023 17285664 | 15 | 595183 | 595256 | Hesseltinella vesiculosa 101127 | GTG|GTAAGTTCCG...TTTTCTTTCTTT/TTGTGCCTGACC...CTTAG|CTG | 1 | 1 | 98.793 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);