home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

15 rows where transcript_id = 17285663

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: dinucleotide_pair, score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354032 GT-AG 0 1.0318232400673596e-05 90 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 1 614535 614624 Hesseltinella vesiculosa 101127 CAG|GTACACGACG...AAGTCATTGGCA/AGTTGACTGACC...TTCAG|TTG 0 1 18.981
92354033 GT-AG 0 1.000000099473604e-05 77 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 2 614269 614345 Hesseltinella vesiculosa 101127 CAG|GTAAAACAAA...TCACCCTCCACT/GTTCGACTCACC...ACTAG|AGC 0 1 22.802
92354034 GT-AG 0 1.000000099473604e-05 52 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 3 613662 613713 Hesseltinella vesiculosa 101127 AGG|GTAAGATCCG...CACCCCTTTCTT/CGTTAAGTCACC...TTCAG|AAA 0 1 34.021
92354035 GT-AG 0 0.0019299055230875 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 4 613165 613228 Hesseltinella vesiculosa 101127 CAG|GTACACCTTG...TTTTTCATATTC/TTTTTTTTCATA...TTTAG|ACA 1 1 42.773
92354036 GT-AG 0 0.0756980157925416 62 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 5 612617 612678 Hesseltinella vesiculosa 101127 AAG|GTATCATTAG...ACTTCTTTTGTT/ACGCTGCTGACT...ATCAG|AAA 1 1 52.598
92354037 GT-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 6 612314 612368 Hesseltinella vesiculosa 101127 CAG|GTAAATGCAG...GACTACTTGATA/TTGATATTGATT...CATAG|GGA 0 1 57.611
92354038 GT-AG 0 1.000000099473604e-05 53 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 7 611943 611995 Hesseltinella vesiculosa 101127 AAG|GTACAGCGCG...ACACTCTAAAAC/AACACACTCACC...AATAG|GTC 0 1 64.039
92354039 GT-AG 0 1.9338229416013188e-05 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 8 611637 611700 Hesseltinella vesiculosa 101127 TGG|GTAAGCACAT...GGACACTTAACG/AGGCAGTTGACC...AACAG|ATC 2 1 68.931
92354040 GT-AG 0 3.537435899879905e-05 83 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 9 611229 611311 Hesseltinella vesiculosa 101127 GAA|GTAAGTCTAC...ATTTTTTTATTT/TATTTTTTTATT...GAAAG|TGG 0 1 75.5
92354041 GT-AG 0 1.000000099473604e-05 68 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 10 610993 611060 Hesseltinella vesiculosa 101127 AAG|GTACAAGCAT...CTGGTCTTATCC/TCTGGTCTTATC...TTTAG|ATC 0 1 78.896
92354042 GC-AG 0 1.000000099473604e-05 55 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 11 610837 610891 Hesseltinella vesiculosa 101127 AAG|GCAAGTGACC...GGTACTTTGTCA/TACTTTGTCAAT...TTTAG|AGG 2 1 80.938
92354043 GT-AG 0 1.000000099473604e-05 54 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 12 610572 610625 Hesseltinella vesiculosa 101127 TCG|GTAAGTCCAG...AATACAATGACA/ATGACACTCATG...TTTAG|AGG 0 1 85.203
92354044 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 13 610280 610343 Hesseltinella vesiculosa 101127 AAG|GTTGGCTACC...TTTTTCTTGTCT/TCGAGACTGATT...GTTAG|AAA 0 1 89.812
92354045 GT-AG 0 1.000000099473604e-05 70 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 14 610090 610159 Hesseltinella vesiculosa 101127 AAG|GTAAAAAAAA...ATTATTTTATTC/TATTATTTTATT...ACTAG|GTC 0 1 92.238
92354046 GT-AG 0 1.000000099473604e-05 56 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 15 609989 610044 Hesseltinella vesiculosa 101127 GAG|GTATGGAATA...CTTTTCTCACTT/ACTTTTCTCACT...TATAG|AAA 0 1 93.147

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.638ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)