introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
15 rows where transcript_id = 17285663
This data as json, CSV (advanced)
Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354032 | GT-AG | 0 | 1.0318232400673596e-05 | 90 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 1 | 614535 | 614624 | Hesseltinella vesiculosa 101127 | CAG|GTACACGACG...AAGTCATTGGCA/AGTTGACTGACC...TTCAG|TTG | 0 | 1 | 18.981 |
92354033 | GT-AG | 0 | 1.000000099473604e-05 | 77 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 2 | 614269 | 614345 | Hesseltinella vesiculosa 101127 | CAG|GTAAAACAAA...TCACCCTCCACT/GTTCGACTCACC...ACTAG|AGC | 0 | 1 | 22.802 |
92354034 | GT-AG | 0 | 1.000000099473604e-05 | 52 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 3 | 613662 | 613713 | Hesseltinella vesiculosa 101127 | AGG|GTAAGATCCG...CACCCCTTTCTT/CGTTAAGTCACC...TTCAG|AAA | 0 | 1 | 34.021 |
92354035 | GT-AG | 0 | 0.0019299055230875 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 4 | 613165 | 613228 | Hesseltinella vesiculosa 101127 | CAG|GTACACCTTG...TTTTTCATATTC/TTTTTTTTCATA...TTTAG|ACA | 1 | 1 | 42.773 |
92354036 | GT-AG | 0 | 0.0756980157925416 | 62 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 5 | 612617 | 612678 | Hesseltinella vesiculosa 101127 | AAG|GTATCATTAG...ACTTCTTTTGTT/ACGCTGCTGACT...ATCAG|AAA | 1 | 1 | 52.598 |
92354037 | GT-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 6 | 612314 | 612368 | Hesseltinella vesiculosa 101127 | CAG|GTAAATGCAG...GACTACTTGATA/TTGATATTGATT...CATAG|GGA | 0 | 1 | 57.611 |
92354038 | GT-AG | 0 | 1.000000099473604e-05 | 53 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 7 | 611943 | 611995 | Hesseltinella vesiculosa 101127 | AAG|GTACAGCGCG...ACACTCTAAAAC/AACACACTCACC...AATAG|GTC | 0 | 1 | 64.039 |
92354039 | GT-AG | 0 | 1.9338229416013188e-05 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 8 | 611637 | 611700 | Hesseltinella vesiculosa 101127 | TGG|GTAAGCACAT...GGACACTTAACG/AGGCAGTTGACC...AACAG|ATC | 2 | 1 | 68.931 |
92354040 | GT-AG | 0 | 3.537435899879905e-05 | 83 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 9 | 611229 | 611311 | Hesseltinella vesiculosa 101127 | GAA|GTAAGTCTAC...ATTTTTTTATTT/TATTTTTTTATT...GAAAG|TGG | 0 | 1 | 75.5 |
92354041 | GT-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 10 | 610993 | 611060 | Hesseltinella vesiculosa 101127 | AAG|GTACAAGCAT...CTGGTCTTATCC/TCTGGTCTTATC...TTTAG|ATC | 0 | 1 | 78.896 |
92354042 | GC-AG | 0 | 1.000000099473604e-05 | 55 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 11 | 610837 | 610891 | Hesseltinella vesiculosa 101127 | AAG|GCAAGTGACC...GGTACTTTGTCA/TACTTTGTCAAT...TTTAG|AGG | 2 | 1 | 80.938 |
92354043 | GT-AG | 0 | 1.000000099473604e-05 | 54 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 12 | 610572 | 610625 | Hesseltinella vesiculosa 101127 | TCG|GTAAGTCCAG...AATACAATGACA/ATGACACTCATG...TTTAG|AGG | 0 | 1 | 85.203 |
92354044 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 13 | 610280 | 610343 | Hesseltinella vesiculosa 101127 | AAG|GTTGGCTACC...TTTTTCTTGTCT/TCGAGACTGATT...GTTAG|AAA | 0 | 1 | 89.812 |
92354045 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 14 | 610090 | 610159 | Hesseltinella vesiculosa 101127 | AAG|GTAAAAAAAA...ATTATTTTATTC/TATTATTTTATT...ACTAG|GTC | 0 | 1 | 92.238 |
92354046 | GT-AG | 0 | 1.000000099473604e-05 | 56 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403192 17285663 | 15 | 609989 | 610044 | Hesseltinella vesiculosa 101127 | GAG|GTATGGAATA...CTTTTCTCACTT/ACTTTTCTCACT...TATAG|AAA | 0 | 1 | 93.147 |
Advanced export
JSON shape: default, array, newline-delimited, object
CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);