home / WtMTA

introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 17285660

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, length, phase, in_cds

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92354011 GT-AG 0 1.000000099473604e-05 103 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 2 80282 80384 Hesseltinella vesiculosa 101127 AAA|GTAAGGCCCC...TTGCGCTTATCC/GCAAGACTCACT...GATAG|ATA 2 1 3.968
92354012 GT-AG 0 0.0003531935442506 63 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 3 81229 81291 Hesseltinella vesiculosa 101127 TCT|GTAAACCAAC...TCGTTCTTGTCT/TTGTCTCTCAAC...GACAG|GCC 0 1 19.838
92354013 GT-AG 0 3.039086019928642 71 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 4 81908 81978 Hesseltinella vesiculosa 101127 AGT|GTCCCTTTTT...TTTATTTTAACA/TTTATTTTAACA...ACCAG|GTG 1 1 31.422
92354014 GT-AG 0 1.000000099473604e-05 80 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 5 83649 83728 Hesseltinella vesiculosa 101127 GAG|GTAAAGGGCT...CTTTCCTTTGTT/CTTTGTTTGATA...CACAG|GAG 0 1 62.824
92354015 GT-AG 0 1.000000099473604e-05 74 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 6 84944 85017 Hesseltinella vesiculosa 101127 AAG|GTAAAAAAAA...CATTTTTTCTTT/GACGTGCTCATT...TACAG|CAC 0 1 85.671
92354016 GT-AG 0 1.000000099473604e-05 62 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 7 85105 85166 Hesseltinella vesiculosa 101127 TTG|GTAAGAGGGG...AAATATTTATTA/AAAATATTTATT...TTAAG|ACG 0 1 87.307
92354017 GT-AG 0 1.000000099473604e-05 79 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 8 85495 85573 Hesseltinella vesiculosa 101127 CCG|GTAAAAAAAA...GTTGCTTTAACT/GTTGCTTTAACT...GCTAG|TTC 1 1 93.475
92356611 GT-AG 0 1.000000099473604e-05 103 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 1 80041 80143 Hesseltinella vesiculosa 101127 AAG|GTGAGTAGTA...CACGCCTTCACT/ATTTCCCTCACA...ACAAG|ATA   0 2.012

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options:

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 91.169ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)