introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 17285660
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Suggested facets: score, length, phase, in_cds
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354011 | GT-AG | 0 | 1.000000099473604e-05 | 103 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 | 2 | 80282 | 80384 | Hesseltinella vesiculosa 101127 | AAA|GTAAGGCCCC...TTGCGCTTATCC/GCAAGACTCACT...GATAG|ATA | 2 | 1 | 3.968 |
92354012 | GT-AG | 0 | 0.0003531935442506 | 63 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 | 3 | 81229 | 81291 | Hesseltinella vesiculosa 101127 | TCT|GTAAACCAAC...TCGTTCTTGTCT/TTGTCTCTCAAC...GACAG|GCC | 0 | 1 | 19.838 |
92354013 | GT-AG | 0 | 3.039086019928642 | 71 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 | 4 | 81908 | 81978 | Hesseltinella vesiculosa 101127 | AGT|GTCCCTTTTT...TTTATTTTAACA/TTTATTTTAACA...ACCAG|GTG | 1 | 1 | 31.422 |
92354014 | GT-AG | 0 | 1.000000099473604e-05 | 80 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 | 5 | 83649 | 83728 | Hesseltinella vesiculosa 101127 | GAG|GTAAAGGGCT...CTTTCCTTTGTT/CTTTGTTTGATA...CACAG|GAG | 0 | 1 | 62.824 |
92354015 | GT-AG | 0 | 1.000000099473604e-05 | 74 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 | 6 | 84944 | 85017 | Hesseltinella vesiculosa 101127 | AAG|GTAAAAAAAA...CATTTTTTCTTT/GACGTGCTCATT...TACAG|CAC | 0 | 1 | 85.671 |
92354016 | GT-AG | 0 | 1.000000099473604e-05 | 62 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 | 7 | 85105 | 85166 | Hesseltinella vesiculosa 101127 | TTG|GTAAGAGGGG...AAATATTTATTA/AAAATATTTATT...TTAAG|ACG | 0 | 1 | 87.307 |
92354017 | GT-AG | 0 | 1.000000099473604e-05 | 79 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 | 8 | 85495 | 85573 | Hesseltinella vesiculosa 101127 | CCG|GTAAAAAAAA...GTTGCTTTAACT/GTTGCTTTAACT...GCTAG|TTC | 1 | 1 | 93.475 |
92356611 | GT-AG | 0 | 1.000000099473604e-05 | 103 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1403027 17285660 | 1 | 80041 | 80143 | Hesseltinella vesiculosa 101127 | AAG|GTGAGTAGTA...CACGCCTTCACT/ATTTCCCTCACA...ACAAG|ATA | 0 | 2.012 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);