introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
9 rows where transcript_id = 17285659
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Suggested facets: score, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92354002 | GT-AG | 0 | 0.0001700399315326 | 77 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314168 17285659 | 1 | 353467 | 353543 | Hesseltinella vesiculosa 101127 | AAG|GTAAGCTTCA...CAATGCTTGACC/CAATGCTTGACC...GCCAG|GAA | 0 | 1 | 2.454 |
92354003 | GT-AG | 0 | 2.849901458776746e-05 | 288 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314168 17285659 | 2 | 351885 | 352172 | Hesseltinella vesiculosa 101127 | CTG|GTACAATCTC...ATGATCCTAATG/ATGATCCTAATG...GCAAG|GAT | 1 | 1 | 27.074 |
92354004 | GT-AG | 0 | 0.0105815810810348 | 75 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314168 17285659 | 3 | 350560 | 350634 | Hesseltinella vesiculosa 101127 | GGC|GTACGCCTTT...TTTTTTTTTTTT/CATCGACTCACC...CCTAG|GAA | 0 | 1 | 50.856 |
92354005 | GT-AG | 0 | 0.0001649988954969 | 147 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314168 17285659 | 4 | 349984 | 350130 | Hesseltinella vesiculosa 101127 | CCC|GTTCGCAAGC...AAGCTCCTAACA/CGTTCCCTCACA...ATGAG|AAA | 0 | 1 | 59.018 |
92354006 | GT-AG | 0 | 1.000000099473604e-05 | 99 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314168 17285659 | 5 | 349333 | 349431 | Hesseltinella vesiculosa 101127 | GTT|GTCGATGCAG...CGTTCCCTGTCG/CGACCACTGACC...AGAAG|ATG | 0 | 1 | 69.521 |
92354007 | GT-AG | 0 | 0.0001301805090653 | 45 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314168 17285659 | 6 | 348908 | 348952 | Hesseltinella vesiculosa 101127 | CCC|GTCCTCCACC...TCTTCCGTCCCC/CCCCTGCGAACC...TCCAG|CCA | 2 | 1 | 76.75 |
92354008 | GT-AG | 0 | 0.0072824079778153 | 204 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314168 17285659 | 7 | 348428 | 348631 | Hesseltinella vesiculosa 101127 | GTC|GTCCTCTGTA...GAGGTCTTGGCC/ACCCTCCTGAGG...GCTAG|CTT | 2 | 1 | 82.002 |
92354009 | GT-AG | 0 | 1.000000099473604e-05 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314168 17285659 | 8 | 347729 | 347786 | Hesseltinella vesiculosa 101127 | CGG|GTAAGCGCAG...GCCTTCTGAATT/AGCCTTCTGAAT...TGTAG|CCA | 1 | 1 | 94.197 |
92354010 | GT-AG | 0 | 0.0001360249617798 | 61 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314168 17285659 | 9 | 347562 | 347622 | Hesseltinella vesiculosa 101127 | GAT|GTAATTTACC...CCCTGCTTACCT/CCCCTGCTTACC...CTCAG|TGT | 2 | 1 | 96.214 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);