introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
20 rows where transcript_id = 17285657
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Suggested facets: dinucleotide_pair, score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92353968 | GT-AG | 0 | 1.000000099473604e-05 | 78 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 1 | 128826 | 128903 | Hesseltinella vesiculosa 101127 | TAG|GTAATGCCTA...CTGCTTTTGTCT/TTTTGTCTAACA...AACAG|AAA | 1 | 1 | 0.509 |
92353969 | GT-AG | 0 | 0.0006204427397349 | 102 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 2 | 128602 | 128703 | Hesseltinella vesiculosa 101127 | AAG|GTACGTTTTG...TTTATTTTGAAC/TTTATTTTGAAC...TCTAG|GTC | 0 | 1 | 2.725 |
92353970 | GT-AG | 0 | 1.000000099473604e-05 | 85 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 3 | 128259 | 128343 | Hesseltinella vesiculosa 101127 | CCT|GTAAGAAAAT...CTGATTTTAATT/CTGATTTTAATT...AATAG|GCG | 0 | 1 | 7.411 |
92353971 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 4 | 127920 | 127979 | Hesseltinella vesiculosa 101127 | AAG|GTAAAATAAA...GAACCTGTGACT/CTGTGACTCACT...ATCAG|TTG | 0 | 1 | 12.48 |
92353972 | GC-AG | 0 | 1.000000099473604e-05 | 68 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 5 | 127647 | 127714 | Hesseltinella vesiculosa 101127 | GAC|GCAAGTAGAC...AGAATCTCATCC/AAGAATCTCATC...TCTAG|AAG | 1 | 1 | 16.203 |
92353973 | GT-AG | 0 | 1.000000099473604e-05 | 85 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 6 | 127368 | 127452 | Hesseltinella vesiculosa 101127 | ATG|GTAAGATTTC...TGACCCTTCTCA/ACCCTTCTCATT...AAAAG|TGC | 0 | 1 | 19.728 |
92353974 | GT-AG | 0 | 1.000000099473604e-05 | 51 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 7 | 127226 | 127276 | Hesseltinella vesiculosa 101127 | ACG|GTAAAATAAG...TTTCCTGTGACA/CATGTGCTTACC...CTTAG|ATG | 1 | 1 | 21.381 |
92353975 | GT-AG | 0 | 0.0298998110957374 | 66 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 8 | 127103 | 127168 | Hesseltinella vesiculosa 101127 | AAG|GTACCATTGG...TTCTCCTTTGTC/CCAATACCAACC...AATAG|TTC | 1 | 1 | 22.416 |
92353976 | GT-AG | 0 | 1.000000099473604e-05 | 74 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 9 | 126838 | 126911 | Hesseltinella vesiculosa 101127 | CTG|GTAAGTCATG...ATCCTCTCACCT/CATCCTCTCACC...GGTAG|AAC | 0 | 1 | 25.886 |
92353977 | GT-AG | 0 | 0.000149720183534 | 70 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 10 | 126215 | 126284 | Hesseltinella vesiculosa 101127 | AAG|GTAGACCATC...TTATTTTTATTT/TTTATTTTTATT...TTCAG|ATC | 1 | 1 | 35.931 |
92353978 | GT-AG | 0 | 0.0011490882484868 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 11 | 125153 | 125216 | Hesseltinella vesiculosa 101127 | TCC|GTAAGCCTTG...GTGATGTTGATC/GTGATGTTGATC...CATAG|TCT | 0 | 1 | 54.06 |
92353979 | GT-AG | 0 | 1.000000099473604e-05 | 65 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 12 | 125033 | 125097 | Hesseltinella vesiculosa 101127 | ATG|GTAAGAAAGC...TTGTGTTTAATG/TTGTGTTTAATG...TTTAG|ACT | 1 | 1 | 55.059 |
92353980 | GT-AG | 0 | 1.000000099473604e-05 | 72 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 13 | 124028 | 124099 | Hesseltinella vesiculosa 101127 | CTT|GTAAGGCAAC...ATGTTCTCATTT/TATGTTCTCATT...TGTAG|CAC | 1 | 1 | 72.007 |
92353981 | GT-AG | 0 | 1.000000099473604e-05 | 75 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 14 | 123885 | 123959 | Hesseltinella vesiculosa 101127 | CAG|GTACGATGGA...ATCATTTTATCA/GATTTGCTCACT...CATAG|CTG | 0 | 1 | 73.243 |
92353982 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 15 | 123675 | 123734 | Hesseltinella vesiculosa 101127 | AAG|GTAAGAAAAA...CGGCCGGTGACG/CACCCACTCACT...CATAG|GCT | 0 | 1 | 75.967 |
92353983 | GT-AG | 0 | 1.000000099473604e-05 | 82 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 16 | 123367 | 123448 | Hesseltinella vesiculosa 101127 | CTG|GTAAGCAAAG...TGTCCCTTTTTT/CATGATTTAACC...TGCAG|ATG | 1 | 1 | 80.073 |
92353984 | GT-AG | 0 | 1.220174670303827e-05 | 77 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 17 | 123116 | 123192 | Hesseltinella vesiculosa 101127 | CAG|GTAAGCATCT...TTTTTTTTGTTT/GCCGTACTAAAC...CCTAG|GCA | 1 | 1 | 83.233 |
92353985 | GT-AG | 0 | 1.000000099473604e-05 | 59 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 18 | 122752 | 122810 | Hesseltinella vesiculosa 101127 | ATG|GTAAGCGCAG...GGACCTTTTTCT/GCGCCTCTCACG...TGTAG|ATC | 0 | 1 | 88.774 |
92353986 | GT-AG | 0 | 1.000000099473604e-05 | 60 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 19 | 122424 | 122483 | Hesseltinella vesiculosa 101127 | AAG|GTAAAGCTTA...TGACCCTTTTTA/TCATGCCTGACC...ATCAG|CGT | 1 | 1 | 93.642 |
92353987 | GT-AG | 0 | 1.000000099473604e-05 | 76 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1000839 17285657 | 20 | 122108 | 122183 | Hesseltinella vesiculosa 101127 | AAC|GTAAGAACAA...TTTTTTTTTTTT/GAGATGCTGATC...TATAG|TGA | 1 | 1 | 98.002 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);