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introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

13 rows where transcript_id = 17285654

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Suggested facets: score, length, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92353940 GT-AG 0 1.000000099473604e-05 63 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 1 517926 517988 Hesseltinella vesiculosa 101127 AAA|GTAAAAAAAG...CGGCTTTTGATC/TTGTTGCTCACG...AATAG|TCT 0 1 1.989
92353941 GT-AG 0 3.3447810162499126e-05 55 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 2 517724 517778 Hesseltinella vesiculosa 101127 GGC|GTAAGTAAAT...TTGGCCTTACTC/GCCTTACTCATC...TTTAG|AGA 0 1 4.255
92353942 GT-AG 0 1.0297295166629548e-05 98 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 3 517545 517642 Hesseltinella vesiculosa 101127 AAG|GTACATGCTC...TTTTTTTTTTCA/TTTTTTTTCAAA...GGTAG|CCA 0 1 5.504
92353943 GT-AG 0 1.000000099473604e-05 70 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 4 517056 517125 Hesseltinella vesiculosa 101127 CAG|GTACAAAAAA...TTTTTATTAATT/TTTTTATTAATT...GTTAG|GAC 2 1 11.964
92353944 GT-AG 0 1.000000099473604e-05 64 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 5 516601 516664 Hesseltinella vesiculosa 101127 GAG|GTGGGGGGAA...CAACCCTGAGCC/AAGCGACTGACA...GTTAG|ATT 0 1 17.993
92353945 GT-AG 0 0.0001135698418586 61 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 6 516306 516366 Hesseltinella vesiculosa 101127 AAG|GTACATCACT...TATTTTTTATTC/GTATTTTTTATT...ATTAG|ACA 0 1 21.6
92353946 GT-AG 0 1.000000099473604e-05 69 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 7 515445 515513 Hesseltinella vesiculosa 101127 AAG|GTCAGTGATT...TCCACCTCAACA/ATGGCACTCATT...ATTAG|CTT 0 1 33.811
92353947 GT-AG 0 1.000000099473604e-05 95 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 8 514680 514774 Hesseltinella vesiculosa 101127 AAG|GTAAAAACGA...TTTCCTTGGACG/TTTCCTTGGACG...TGTAG|ACT 1 1 44.141
92353948 GT-AG 0 1.000000099473604e-05 95 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 9 514536 514630 Hesseltinella vesiculosa 101127 AAG|GTAAAACTGG...TTATTTTTATTT/ATTATTTTTATT...ACAAG|GTT 2 1 44.897
92353949 GT-AG 0 1.000000099473604e-05 82 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 10 513067 513148 Hesseltinella vesiculosa 101127 GAG|GTAAAAAAAG...CTCACCTCCATT/GGGGAACTCACC...AATAG|GCA 0 1 66.281
92353950 GT-AG 0 1.580688253678905e-05 65 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 11 512844 512908 Hesseltinella vesiculosa 101127 GCT|GTAAGTAGAC...AAACCCCTGACC/CCTGACCTGACC...TTTAG|AAC 2 1 68.717
92353951 GT-AG 0 0.0003666683948274 324 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 12 510962 511285 Hesseltinella vesiculosa 101127 TTA|GTAAGCCCCC...TTTTTTTTATTG/TTTTTTTTTATT...TATAG|ATG 0 1 92.738
92353952 GT-AG 0 1.000000099473604e-05 89 rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 13 510751 510839 Hesseltinella vesiculosa 101127 AGT|GTAAGTCAAA...TTTTTCTCATTG/TTTTTTCTCATT...AACAG|GTA 2 1 94.619

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);
Powered by Datasette · Queries took 25.554ms · Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)