introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
13 rows where transcript_id = 17285654
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92353940 | GT-AG | 0 | 1.000000099473604e-05 | 63 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 1 | 517926 | 517988 | Hesseltinella vesiculosa 101127 | AAA|GTAAAAAAAG...CGGCTTTTGATC/TTGTTGCTCACG...AATAG|TCT | 0 | 1 | 1.989 |
92353941 | GT-AG | 0 | 3.3447810162499126e-05 | 55 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 2 | 517724 | 517778 | Hesseltinella vesiculosa 101127 | GGC|GTAAGTAAAT...TTGGCCTTACTC/GCCTTACTCATC...TTTAG|AGA | 0 | 1 | 4.255 |
92353942 | GT-AG | 0 | 1.0297295166629548e-05 | 98 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 3 | 517545 | 517642 | Hesseltinella vesiculosa 101127 | AAG|GTACATGCTC...TTTTTTTTTTCA/TTTTTTTTCAAA...GGTAG|CCA | 0 | 1 | 5.504 |
92353943 | GT-AG | 0 | 1.000000099473604e-05 | 70 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 4 | 517056 | 517125 | Hesseltinella vesiculosa 101127 | CAG|GTACAAAAAA...TTTTTATTAATT/TTTTTATTAATT...GTTAG|GAC | 2 | 1 | 11.964 |
92353944 | GT-AG | 0 | 1.000000099473604e-05 | 64 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 5 | 516601 | 516664 | Hesseltinella vesiculosa 101127 | GAG|GTGGGGGGAA...CAACCCTGAGCC/AAGCGACTGACA...GTTAG|ATT | 0 | 1 | 17.993 |
92353945 | GT-AG | 0 | 0.0001135698418586 | 61 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 6 | 516306 | 516366 | Hesseltinella vesiculosa 101127 | AAG|GTACATCACT...TATTTTTTATTC/GTATTTTTTATT...ATTAG|ACA | 0 | 1 | 21.6 |
92353946 | GT-AG | 0 | 1.000000099473604e-05 | 69 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 7 | 515445 | 515513 | Hesseltinella vesiculosa 101127 | AAG|GTCAGTGATT...TCCACCTCAACA/ATGGCACTCATT...ATTAG|CTT | 0 | 1 | 33.811 |
92353947 | GT-AG | 0 | 1.000000099473604e-05 | 95 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 8 | 514680 | 514774 | Hesseltinella vesiculosa 101127 | AAG|GTAAAAACGA...TTTCCTTGGACG/TTTCCTTGGACG...TGTAG|ACT | 1 | 1 | 44.141 |
92353948 | GT-AG | 0 | 1.000000099473604e-05 | 95 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 9 | 514536 | 514630 | Hesseltinella vesiculosa 101127 | AAG|GTAAAACTGG...TTATTTTTATTT/ATTATTTTTATT...ACAAG|GTT | 2 | 1 | 44.897 |
92353949 | GT-AG | 0 | 1.000000099473604e-05 | 82 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 10 | 513067 | 513148 | Hesseltinella vesiculosa 101127 | GAG|GTAAAAAAAG...CTCACCTCCATT/GGGGAACTCACC...AATAG|GCA | 0 | 1 | 66.281 |
92353950 | GT-AG | 0 | 1.580688253678905e-05 | 65 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 11 | 512844 | 512908 | Hesseltinella vesiculosa 101127 | GCT|GTAAGTAGAC...AAACCCCTGACC/CCTGACCTGACC...TTTAG|AAC | 2 | 1 | 68.717 |
92353951 | GT-AG | 0 | 0.0003666683948274 | 324 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 12 | 510962 | 511285 | Hesseltinella vesiculosa 101127 | TTA|GTAAGCCCCC...TTTTTTTTATTG/TTTTTTTTTATT...TATAG|ATG | 0 | 1 | 92.738 |
92353952 | GT-AG | 0 | 1.000000099473604e-05 | 89 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1314259 17285654 | 13 | 510751 | 510839 | Hesseltinella vesiculosa 101127 | AGT|GTAAGTCAAA...TTTTTCTCATTG/TTTTTTCTCATT...AACAG|GTA | 2 | 1 | 94.619 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);