introns
Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)
- id
- INTEGER (primary key), globally unique identifier for each intron
- dinucleotide_pair
- TEXT, terminal dinucleotide sequences of the intron
- is_minor
- INTEGER, indicates if the intron is a minor intron (1) or not (0)
- score
- REAL, score representing the probability (0-100%) of the intron being minor
- length
- INTEGER, length of the intron in base pairs
- transcript_id
- INTEGER (foreign key referencing transcripts(id)), parent transcript
- ordinal_index
- INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
- start
- INTEGER, start position of the intron in the genome
- end
- INTEGER, end position of the intron in the genome
- taxonomy_id
- INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
- scored_motifs
- TEXT, motifs scored for the intron
- phase
- INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
- in_cds
- INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
- relative_position
- REAL, relative position of the intron within the transcript (as a percentage of coding length)
8 rows where transcript_id = 17285653
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Suggested facets: score, length, phase
id ▼ | dinucleotide_pair | is_minor | score | length | transcript_id | ordinal_index | start | end | taxonomy_id | scored_motifs | phase | in_cds | relative_position |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
92353932 | GT-AG | 0 | 0.0012554751017998 | 76 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1278333 17285653 | 1 | 24146 | 24221 | Hesseltinella vesiculosa 101127 | AAG|GTACTCACTT...TCTTTTTTATTC/TTTTTATTCATT...TTTAG|ACA | 1 | 1 | 1.302 |
92353933 | GT-AG | 0 | 1.000000099473604e-05 | 76 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1278333 17285653 | 2 | 23939 | 24014 | Hesseltinella vesiculosa 101127 | AAG|GTAAGCCATT...TTTTTTTTACTC/TTTTTTTTTACT...CATAG|CCC | 0 | 1 | 3.061 |
92353934 | GT-AG | 0 | 0.0007744451544661 | 74 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1278333 17285653 | 3 | 23794 | 23867 | Hesseltinella vesiculosa 101127 | ACT|GTAAGCACAG...CAAATCTTGACC/CAAATCTTGACC...ACTAG|TTG | 2 | 1 | 4.014 |
92353935 | GT-AG | 0 | 0.0006917191939845 | 58 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1278333 17285653 | 4 | 23591 | 23648 | Hesseltinella vesiculosa 101127 | CAG|GTATGTTGCT...ATGACTTTCGCT/AGAATTCTAATG...CCTAG|CTC | 0 | 1 | 5.961 |
92353936 | GT-AG | 0 | 0.0004284389703774 | 73 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1278333 17285653 | 5 | 21772 | 21844 | Hesseltinella vesiculosa 101127 | ACG|GTAATTTTTT...CTCACTTTACCT/AGGTGGCTCACT...TATAG|GAA | 0 | 1 | 29.4 |
92353937 | GT-AG | 0 | 0.0004946097190536 | 73 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1278333 17285653 | 6 | 19940 | 20012 | Hesseltinella vesiculosa 101127 | GAG|GTACACAAAT...CCCCTCTTAACT/TTTTTTTTTACT...TGCAG|GCT | 1 | 1 | 53.014 |
92353938 | GT-AG | 0 | 1.1927224098763688e-05 | 117 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1278333 17285653 | 7 | 18339 | 18455 | Hesseltinella vesiculosa 101127 | GAT|GTTGACGACC...TCATTTTTACTG/CTCATTTTTACT...ATGAG|GCT | 0 | 1 | 72.936 |
92353939 | GT-AG | 0 | 1.000000099473604e-05 | 79 | rna-gnl|WGS:MCGT|DM01DRAFT_mRNA1278333 17285653 | 8 | 17129 | 17207 | Hesseltinella vesiculosa 101127 | AAG|GTAAGGCGAT...TTTTTTTTACTG/TTTTTTTTTACT...CCCAG|GTT | 0 | 1 | 88.119 |
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CREATE TABLE "introns" ( "id" INTEGER, "dinucleotide_pair" TEXT, "is_minor" INTEGER, "score" REAL, "length" INTEGER, "transcript_id" INTEGER, "ordinal_index" INTEGER, "start" INTEGER, "end" INTEGER, "taxonomy_id" INTEGER, "scored_motifs" TEXT, "phase" INTEGER, "in_cds" INTEGER, "relative_position" REAL ,PRIMARY KEY ([id]), FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]), FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id]) ); CREATE INDEX [idx_introns_transcript_id] ON [introns] ([transcript_id]); CREATE INDEX [idx_introns_taxonomy_id] ON [introns] ([taxonomy_id]); CREATE INDEX [idx_introns_phase] ON [introns] ([phase]); CREATE INDEX [idx_introns_is_minor] ON [introns] ([is_minor]); CREATE INDEX [idx_introns_dinucleotide_pair] ON [introns] ([dinucleotide_pair]); CREATE INDEX [idx_introns_score] ON [introns] ([score]); CREATE INDEX [idx_introns_in_cds] ON [introns] ([in_cds]);