introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 17265351

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
92255827 GT-AG 0 0.0075685723908575 477 rna-XM_021441309.1 17265351 1 10884723 10885199 Herrania umbratica 108875 TAG|GTACTCTTAT...TAAACCGTAACT/TTATTTCTGACA...TGCAG|AAT 1 1 44.664
92255828 GT-AG 0 1.000000099473604e-05 396 rna-XM_021441309.1 17265351 2 10883808 10884203 Herrania umbratica 108875 CAG|GTAAGGACTG...GCTCTATTAACT/ATAGTGTTCACT...TCTAG|ATA 1 1 60.954
92255829 GT-AG 0 5.387929178104212e-05 86 rna-XM_021441309.1 17265351 3 10883572 10883657 Herrania umbratica 108875 AAG|GTAGTCAATC...AATATTTTAAAC/TTGGGTTTTACA...CGAAG|GAA 1 1 65.662
92255830 GT-AG 0 1.000000099473604e-05 106 rna-XM_021441309.1 17265351 4 10883275 10883380 Herrania umbratica 108875 AAG|GTAACGGCTC...GGTGCATTACCC/TGTCATTTCATA...CTCAG|GGT 0 1 71.657
92255831 GT-AG 0 1.000000099473604e-05 111 rna-XM_021441309.1 17265351 5 10882953 10883063 Herrania umbratica 108875 TCG|GTTAGCCGCT...ACTACTTTCAAA/AAGTTGGTCATC...GCAAG|ATC 1 1 78.28
92255832 GT-AG 0 0.0001701489307911 90 rna-XM_021441309.1 17265351 6 10882625 10882714 Herrania umbratica 108875 CTA|GTAAGTCTTT...GTGATCTTGAAT/AATCAACTAATT...TACAG|TGG 2 1 85.75
92255833 GT-AG 0 1.7935167992250058e-05 85 rna-XM_021441309.1 17265351 7 10882389 10882473 Herrania umbratica 108875 TAT|GTAAGTATCT...CCCTATTTGATT/AATATATTTATA...GCCAG|GCG 0 1 90.49

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);