introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 1695644

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Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
9636721 GT-AG 0 1.000000099473604e-05 14685 rna-XM_033246585.1 1695644 1 187383 202067 Anneissia japonica 1529436 AAG|GTGCGTACTT...TCATATTTAATA/TTATATTTCATT...TACAG|ACA 1 1 7.928
9636722 GT-AG 0 1.000000099473604e-05 666 rna-XM_033246585.1 1695644 2 186577 187242 Anneissia japonica 1529436 CAG|GTAAGAATAG...CAATATTTAAAA/CAATATTTAAAA...CACAG|AGC 0 1 20.541
9636723 GT-AG 0 0.0008448976166154 1065 rna-XM_033246585.1 1695644 3 185394 186458 Anneissia japonica 1529436 CAG|GTAGGCTTAG...GCCACTTTAACT/ATAATATTTATT...TGTAG|ATT 1 1 31.171
9636724 GT-AG 0 1.000000099473604e-05 593 rna-XM_033246585.1 1695644 4 184690 185282 Anneissia japonica 1529436 AAT|GTTAGTAGTC...AATCTTTTATTT/TATGTATTCAAT...TGAAG|GTA 1 1 41.171
9636725 GT-AG 0 6.343102294557066e-05 963 rna-XM_033246585.1 1695644 5 183664 184626 Anneissia japonica 1529436 CAG|GTATGTACAC...AATACTTTATAA/ATTCAGCTTATT...TACAG|TTG 1 1 46.847
9636726 GT-AG 0 1.000000099473604e-05 629 rna-XM_033246585.1 1695644 6 182861 183489 Anneissia japonica 1529436 GCG|GTAAGGGTTT...TATTTCTTGTCT/CTGTTTCCTATT...TTCAG|TGC 1 1 62.523
9636727 GT-AG 0 0.0001237941431078 272 rna-XM_033246585.1 1695644 7 182471 182742 Anneissia japonica 1529436 TAG|GTAATTTCTG...TTTTTTTTATTT/GTTTTTTTTATT...CATAG|TGC 2 1 73.153
9636728 GT-AG 0 1.000000099473604e-05 475 rna-XM_033246585.1 1695644 8 181872 182346 Anneissia japonica 1529436 CAG|GTGAGATAAT...TGTATTTAAACT/TTTAAACTTAAT...TCTAG|AAC 0 1 84.324

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);