introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 16823355

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
89670191 GT-AG 0 1.000000099473604e-05 893 rna-XM_010562691.1 16823355 1 6803320 6804212 Haliaeetus leucocephalus 52644 CAG|GTAATACAGT...AGCTTTTCAGAC/AAGCTTTTCAGA...TACAG|AAG 1 1 2.74
89670192 GT-AG 0 1.000000099473604e-05 5440 rna-XM_010562691.1 16823355 2 6797652 6803091 Haliaeetus leucocephalus 52644 CTG|GTAAGAGATC...CCCACCTAAACC/GTTATGTTTATA...CACAG|TGT 1 1 11.299
89670193 GT-AG 0 0.0026923090717407 5069 rna-XM_010562691.1 16823355 3 6792490 6797558 Haliaeetus leucocephalus 52644 AAG|GTATGCTGGT...AACACCTAAATA/AAGTCACTTATA...TTTAG|GTG 1 1 14.79
89670194 GT-AG 0 0.0003052685386755 5033 rna-XM_010562691.1 16823355 4 6787298 6792330 Haliaeetus leucocephalus 52644 CAG|GTAACCCACT...AATGCTGTAGTC/TGTTCATTCATT...GGTAG|GAA 1 1 20.758
89670195 GT-AG 0 1.000000099473604e-05 14212 rna-XM_010562691.1 16823355 5 6772909 6787120 Haliaeetus leucocephalus 52644 TTG|GTAGGTAACA...ACCTTCTTACAA/TACCTTCTTACA...TACAG|GGA 1 1 27.402
89670196 GT-AG 0 1.000000099473604e-05 2430 rna-XM_010562691.1 16823355 6 6770362 6772791 Haliaeetus leucocephalus 52644 CAG|GTAAGATGGA...ATTCTCTTTTCT/ACAGGTCTAAAT...TCCAG|GTC 1 1 31.794
89670197 GT-AG 0 1.000000099473604e-05 667 rna-XM_010562691.1 16823355 7 6769580 6770246 Haliaeetus leucocephalus 52644 CAG|GTAAGATTCA...CTTTTGTTACCG/TCTTTTGTTACC...TGTAG|AAG 2 1 36.111

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);