introns

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id
INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair
TEXT, terminal dinucleotide sequences of the intron
is_minor
INTEGER, indicates if the intron is a minor intron (1) or not (0)
score
REAL, score representing the probability (0-100%) of the intron being minor
length
INTEGER, length of the intron in base pairs
transcript_id
INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index
INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start
INTEGER, start position of the intron in the genome
end
INTEGER, end position of the intron in the genome
taxonomy_id
INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs
TEXT, motifs scored for the intron
phase
INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds
INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position
REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 16823338

✎ View and edit SQL

This data as json, CSV (advanced)

Suggested facets: score, phase

id ▼ dinucleotide_pair is_minor score length transcript_id ordinal_index start end taxonomy_id scored_motifs phase in_cds relative_position
89669840 GT-AG 0 1.000000099473604e-05 318 rna-XM_010563499.1 16823338 1 29864076 29864393 Haliaeetus leucocephalus 52644 GTG|GTACGGACCG...AGCCCCTGTGCT/AGCTGTTTGAGG...CCCAG|GAG 0 1 3.189
89669841 GT-AG 0 0.0136437145672742 1307 rna-XM_010563499.1 16823338 2 29864521 29865827 Haliaeetus leucocephalus 52644 TGT|GTAGGCTCTG...TCTGTCTTGCTC/TTGCCTCTGATG...AACAG|ACT 1 1 7.161
89669842 GT-AG 0 1.000000099473604e-05 321 rna-XM_010563499.1 16823338 3 29865942 29866262 Haliaeetus leucocephalus 52644 TAG|GTGTGTGACA...GTGCCCTTCTCC/CTGCTGGTAAAG...CCCAG|AGC 1 1 10.725
89669843 GT-AG 0 1.000000099473604e-05 776 rna-XM_010563499.1 16823338 4 29866392 29867167 Haliaeetus leucocephalus 52644 CCT|GTGAGTGGCT...GGGTTCTGAAAA/TGGGTTCTGAAA...AGCAG|ATG 1 1 14.759
89669844 GT-AG 0 5.8810655415607374e-05 767 rna-XM_010563499.1 16823338 5 29868049 29868815 Haliaeetus leucocephalus 52644 CCC|GTGCCACCGG...GGCCCCTCATCG/CGGCCCCTCATC...GACAG|GAG 0 1 42.308
89669845 GT-AG 0 1.000000099473604e-05 717 rna-XM_010563499.1 16823338 6 29869224 29869940 Haliaeetus leucocephalus 52644 AAG|GTAACGGGCC...GGGGGTTGGACA/GGGGGTTGGACA...TTCAG|GTG 0 1 55.066
89669846 GT-AG 0 1.000000099473604e-05 651 rna-XM_010563499.1 16823338 7 29870068 29870718 Haliaeetus leucocephalus 52644 TGG|GTGAGGATCA...CCTGCTTTGGCT/CTTTGGCTGACA...CTGAG|CTA 1 1 59.037
89669847 GT-AG 0 1.000000099473604e-05 826 rna-XM_010563499.1 16823338 8 29870971 29871796 Haliaeetus leucocephalus 52644 CCG|GTGAGTCACA...CTTCCCTTGCCG/CCGGGAATGAAT...AGCAG|GTG 1 1 66.917

Advanced export

JSON shape: default, array, newline-delimited, object

CSV options: 

CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);