WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 16807728

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
89548045	GT-AG	4.586705073436129e-05	3959	rna-XM_009922054.1 16807728	1	24854	28812	Haliaeetus albicilla 8969	TTG\|GTAAGTTTCA...CTATTCTAAACC/ACTATTCTAAAC...TGCAG\|GGT	1	1	11.636
89548046	GT-AG	0.0015028140594795	1287	rna-XM_009922054.1 16807728	2	23415	24701	Haliaeetus albicilla 8969	AAG\|GTATGTATGG...ACTGTTTTGACC/ACTGTTTTGACC...TCCAG\|CTG	0	1	24.934
89548047	GT-AG	1.000000099473604e-05	844	rna-XM_009922054.1 16807728	3	22481	23324	Haliaeetus albicilla 8969	AAG\|GTAAAAGAAA...TTTCTCTTTGCT/CTGAAACTAATT...CTCAG\|AGG	0	1	32.808
89548048	GT-AG	0.0111982222481504	1367	rna-XM_009922054.1 16807728	4	20964	22330	Haliaeetus albicilla 8969	CAG\|GTATCTGACT...TGACCTGTAACT/TATGTGTTCAGT...CCTAG\|GGT	0	1	45.932
89548049	GT-AG	5.146133548562899e-05	1214	rna-XM_009922054.1 16807728	5	19686	20899	Haliaeetus albicilla 8969	CTG\|GTATGAATCC...AGTTTCTTTTTG/CTATAGTTCACT...CTCAG\|ATA	1	1	51.531
89548050	GT-AG	2.89268059692781e-05	2019	rna-XM_009922054.1 16807728	6	17468	19486	Haliaeetus albicilla 8969	CAG\|GTATGATGTC...AGTATCTGATCT/TAGTATCTGATC...TGTAG\|AGG	2	1	68.941
89548051	GT-AG	0.0002151036424024	3148	rna-XM_009922054.1 16807728	7	14217	17364	Haliaeetus albicilla 8969	CAG\|GTATGCACAG...CCTCACTTACTC/CACTTACTCATT...AACAG\|ATC	0	1	77.953
89548052	GT-AG	1.000000099473604e-05	321	rna-XM_009922054.1 16807728	8	13804	14124	Haliaeetus albicilla 8969	AAG\|GTAAGTTGAG...TGAATTGTAATT/TAATTATTCATC...CACAG\|GTA	2	1	86.002

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);