WtMTA: introns: 8 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

8 rows where transcript_id = 16807670

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
89547485	GT-AG	1.000000099473604e-05	230	rna-XM_009912659.1 16807670	1	273	502	Haliaeetus albicilla 8969	AGG\|GTAAGCCAGT...TTGCTCTTTCCT/TCCTGCCTGACA...CCTAG\|GTC	1	1	8.84
89547486	GC-AG	1.000000099473604e-05	852	rna-XM_009912659.1 16807670	2	646	1497	Haliaeetus albicilla 8969	GAG\|GCAAGTAATG...TTTTCTTTATTA/CTTTTCTTTATT...TTTAG\|GTC	0	1	20.438
89547487	GT-AG	1.000000099473604e-05	4289	rna-XM_009912659.1 16807670	3	1613	5901	Haliaeetus albicilla 8969	AAA\|GTGAGTACTG...CTTGCCTTGGTT/CTTGGTTTGAGT...TGCAG\|TTC	1	1	29.765
89547488	GT-AG	1.000000099473604e-05	532	rna-XM_009912659.1 16807670	4	6059	6590	Haliaeetus albicilla 8969	ACG\|GTAAGGAGCA...CCTGCTCTGACA/CCTGCTCTGACA...TTCAG\|GTA	2	1	42.498
89547489	GT-AG	1.000000099473604e-05	941	rna-XM_009912659.1 16807670	5	6682	7622	Haliaeetus albicilla 8969	AAG\|GTGAGGGTAG...GTTGCCATGCTT/ATTGCTCCAAGC...TGCAG\|GCC	0	1	49.878
89547490	GT-AG	1.000000099473604e-05	552	rna-XM_009912659.1 16807670	6	7707	8258	Haliaeetus albicilla 8969	AAG\|GTTTGTAAAC...TTCTTCTTTGCT/GGTTCCTCTAGC...CCCAG\|GAA	0	1	56.691
89547491	GT-AG	1.000000099473604e-05	944	rna-XM_009912659.1 16807670	7	8445	9388	Haliaeetus albicilla 8969	AAG\|GTAGAGGTGC...AAGTTGCTAACA/AAGTTGCTAACA...TCCAG\|GCA	0	1	71.776
89547492	GT-AG	1.000000099473604e-05	1158	rna-XM_009912659.1 16807670	8	9629	10786	Haliaeetus albicilla 8969	AAG\|GTGCGTGTTG...TGTCCTTTATTT/ATGTCCTTTATT...TGCAG\|GAA	0	1	91.241

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);