WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 1668856

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
9479410	GT-AG	0.0365299173080926	22474	rna-gnl\|WGS:WBMU\|ANHANH_R10349_mrna 1668856	1	1259782	1282255	Anhinga anhinga 56067	AAG\|GTATCGTGCA...CAGTATTTAATC/CAGTATTTAATC...CCCAG\|ACT	0	1	9.78
9479411	GT-AG	1.000000099473604e-05	5746	rna-gnl\|WGS:WBMU\|ANHANH_R10349_mrna 1668856	2	1253238	1258983	Anhinga anhinga 56067	AAG\|GTAATGTGAC...CCTGCCTTCACT/CCTTCACTCATC...TGCAG\|GTG	0	1	46.419
9479412	GT-AG	4.4422727279522544e-05	1766	rna-gnl\|WGS:WBMU\|ANHANH_R10349_mrna 1668856	3	1250980	1252745	Anhinga anhinga 56067	GAG\|GTACGTTGTT...CCGTCTTTTTCT/TAGCAATTCACA...CCCAG\|GTC	0	1	69.008
9479413	GT-AG	1.000000099473604e-05	2026	rna-gnl\|WGS:WBMU\|ANHANH_R10349_mrna 1668856	4	1248820	1250845	Anhinga anhinga 56067	GAG\|GTGGGTTGGG...TCTTCGTTAACG/TCTTCGTTAACG...TTCAG\|GAT	2	1	75.161
9479414	GT-AG	1.000000099473604e-05	2899	rna-gnl\|WGS:WBMU\|ANHANH_R10349_mrna 1668856	5	1245794	1248692	Anhinga anhinga 56067	AGG\|GTGAGTGCCC...TTTTCTTTTTCT/GGCCATGTTATC...TTCAG\|ATA	0	1	80.992
9479415	GT-AG	1.000000099473604e-05	2083	rna-gnl\|WGS:WBMU\|ANHANH_R10349_mrna 1668856	6	1243585	1245667	Anhinga anhinga 56067	GAG\|GTGAGCACAG...CCCCCCTCACTG/ACCCCCCTCACT...TACAG\|GTG	0	1	86.777
9479416	GT-AG	1.000000099473604e-05	659	rna-gnl\|WGS:WBMU\|ANHANH_R10349_mrna 1668856	7	1242791	1243449	Anhinga anhinga 56067	AAG\|GTCAGACTCC...GTGTCTTTGCCC/CCGCTCCTAACG...TGCAG\|GTC	0	1	92.975

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);