WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 1668837

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
9479184	GT-AG	1.000000099473604e-05	734	rna-gnl\|WGS:WBMU\|ANHANH_R13110_mrna 1668837	1	1542745	1543478	Anhinga anhinga 56067	AAA\|GTAAGTCATA...TTGATCTTGCCA/CCACTGTTCATT...CACAG\|GTC	0	1	41.155
9479185	GT-AG	1.000000099473604e-05	1502	rna-gnl\|WGS:WBMU\|ANHANH_R13110_mrna 1668837	2	1541096	1542597	Anhinga anhinga 56067	CAG\|GTGCGTGCCA...TTTTCTTTTTCT/CTAATTCTAATT...TTGAG\|ATT	0	1	50.0
9479186	GT-AG	1.000000099473604e-05	640	rna-gnl\|WGS:WBMU\|ANHANH_R13110_mrna 1668837	3	1540327	1540966	Anhinga anhinga 56067	GAG\|GTAAGAATTG...GTGTGTTTGACT/GTGTGTTTGACT...TTCAG\|GAG	0	1	57.762
9479187	GT-AG	1.000000099473604e-05	2008	rna-gnl\|WGS:WBMU\|ANHANH_R13110_mrna 1668837	4	1538223	1540230	Anhinga anhinga 56067	ATG\|GTAGGCACTT...ATGCTCTAAGAC/GATGCTCTAAGA...TCTAG\|GTC	0	1	63.538
9479188	GT-AG	1.000000099473604e-05	2743	rna-gnl\|WGS:WBMU\|ANHANH_R13110_mrna 1668837	5	1535228	1537970	Anhinga anhinga 56067	CAG\|GTGAGGCATC...TTCTCCTTTTCA/CAGGTTCTGATT...CACAG\|GGG	0	1	78.7
9479189	GT-AG	0.0007853937202358	556	rna-gnl\|WGS:WBMU\|ANHANH_R13110_mrna 1668837	6	1534539	1535094	Anhinga anhinga 56067	CAA\|GTGCACAGTG...GTCTTCTTGACC/GTCTTCTTGACC...ATCAG\|TTA	1	1	86.703
9479190	GT-AG	1.000000099473604e-05	1236	rna-gnl\|WGS:WBMU\|ANHANH_R13110_mrna 1668837	7	1533223	1534458	Anhinga anhinga 56067	AAG\|GTGAGGCCCT...GTCCATTTAGTC/AATGGGCTCAGA...TCTAG\|GTG	0	1	91.516

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);