WtMTA: introns: 7 rows where transcript

Data license: ODbL · Data source: Larue & Roy, 2023 · About: Minor Intron Database (WtMTA)

id: INTEGER (primary key), globally unique identifier for each intron
dinucleotide_pair: TEXT, terminal dinucleotide sequences of the intron
is_minor: INTEGER, indicates if the intron is a minor intron (1) or not (0)
score: REAL, score representing the probability (0-100%) of the intron being minor
length: INTEGER, length of the intron in base pairs
transcript_id: INTEGER (foreign key referencing transcripts(id)), parent transcript
ordinal_index: INTEGER, ordinal position of the intron within the transcript (e.g., 3 for the third intron)
start: INTEGER, start position of the intron in the genome
end: INTEGER, end position of the intron in the genome
taxonomy_id: INTEGER (foreign key referencing genomes(taxonomy_id)), NCBI taxonomy identifier for species
scored_motifs: TEXT, motifs scored for the intron
phase: INTEGER, phase of the intron in coding sequence (0, 1, or 2 or null for introns outside of coding sequence)
in_cds: INTEGER, indicates if the intron is within the coding sequence (1) or not (0; e.g., UTR introns)
relative_position: REAL, relative position of the intron within the transcript (as a percentage of coding length)

7 rows where transcript_id = 1668821

descending

id ▼	dinucleotide_pair	score	length	transcript_id	ordinal_index	start	end	taxonomy_id	scored_motifs	phase	in_cds	relative_position
9479064	GT-AG	1.000000099473604e-05	530	rna-gnl\|WGS:WBMU\|ANHANH_R13004_mrna 1668821	1	675729	676258	Anhinga anhinga 56067	TGA\|GTGAGTCTAC...TAATTTTTAACT/TAATTTTTAACT...TTTAG\|GTG	2	1	13.646
9479065	GT-AG	1.000000099473604e-05	1371	rna-gnl\|WGS:WBMU\|ANHANH_R13004_mrna 1668821	2	674297	675667	Anhinga anhinga 56067	CTG\|GTAAGTTAAT...TGGAACTTATGA/ATGGAACTTATG...GCTAG\|GTC	0	1	20.0
9479066	GT-AG	1.000000099473604e-05	778	rna-gnl\|WGS:WBMU\|ANHANH_R13004_mrna 1668821	4	673372	674149	Anhinga anhinga 56067	AAG\|GTAAATACAG...TTTAACTTAACG/TTGTATTTAACT...CCTAG\|ATT	2	1	34.896
9479067	GT-AG	0.0001154953813007	703	rna-gnl\|WGS:WBMU\|ANHANH_R13004_mrna 1668821	5	672538	673240	Anhinga anhinga 56067	TAA\|GTTTTTGTTT...AGTTTTGTAAAA/AGTTTTGTAAAA...GGCAG\|GAC	1	1	48.542
9479068	GT-AG	1.000000099473604e-05	985	rna-gnl\|WGS:WBMU\|ANHANH_R13004_mrna 1668821	6	671476	672460	Anhinga anhinga 56067	GAG\|GTAAAAGTTT...GCTGCCTTGACA/GCTGCCTTGACA...TCTAG\|ATC	0	1	56.563
9479069	GT-AG	1.000000099473604e-05	500	rna-gnl\|WGS:WBMU\|ANHANH_R13004_mrna 1668821	7	670837	671336	Anhinga anhinga 56067	TTG\|GTAAGGAAAA...TTTGTTTTGATA/TTTGTTTTGATA...CTTAG\|AAC	1	1	71.042
9479070	GT-AG	2.8089337074950232e-05	1357	rna-gnl\|WGS:WBMU\|ANHANH_R13004_mrna 1668821	8	669379	670735	Anhinga anhinga 56067	TGT\|GTAAGGATTT...TTTTCCTTTTCT/TTTTCTTTCAAT...TCCAG\|ACT	0	1	81.562

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CREATE TABLE "introns" (
"id" INTEGER,
  "dinucleotide_pair" TEXT,
  "is_minor" INTEGER,
  "score" REAL,
  "length" INTEGER,
  "transcript_id" INTEGER,
  "ordinal_index" INTEGER,
  "start" INTEGER,
  "end" INTEGER,
  "taxonomy_id" INTEGER,
  "scored_motifs" TEXT,
  "phase" INTEGER,
  "in_cds" INTEGER,
  "relative_position" REAL
  ,PRIMARY KEY ([id]),
   FOREIGN KEY([transcript_id]) REFERENCES [transcripts]([id]),
   FOREIGN KEY([taxonomy_id]) REFERENCES [genomes]([taxonomy_id])
);
CREATE INDEX [idx_introns_transcript_id]
    ON [introns] ([transcript_id]);
CREATE INDEX [idx_introns_taxonomy_id]
    ON [introns] ([taxonomy_id]);
CREATE INDEX [idx_introns_phase]
    ON [introns] ([phase]);
CREATE INDEX [idx_introns_is_minor]
    ON [introns] ([is_minor]);
CREATE INDEX [idx_introns_dinucleotide_pair]
    ON [introns] ([dinucleotide_pair]);
CREATE INDEX [idx_introns_score]
    ON [introns] ([score]);
CREATE INDEX [idx_introns_in_cds]
    ON [introns] ([in_cds]);